Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01100 ATGGAAACACCACTTGGTGGCTCTTCACCCTNNCCACACTTCCTCCCCTCCCAATCCTCTCCTCTCCTCCTCCTCCTCGCTTTTCTCTCCCTCGCCTTCCTCTCCGCCCTTCTCGCCACCGCCGGCACTGCCTGGCCCAATGGAAGGAACCATAGAGGCCAACGTCCCATCCCCGGCGCCCGCGGCCTTCCAATTCTCGGCAGCTTGTTCTCTCTCACCCACGGCCTTCCCCACCGGACTCTGGCTGCCATGGCGGCAGCCAGAGGCAGCCCTCAGCTAATGGCCTTCAGTCTAGGCTCCACCCCTGTTGTGGTTACCTCCGACCCTCATACAGCCAAGGAGATTCTAACCTCACCCCACTTCGCCAACCGCCCGCTCAAGCAGTCCGCCAAGAGTTTGATGTTCGGGCGAGCCATAGGGTTCGCCCCAAACGGCACCTACTGGCGTCTACTGAGGCGAATCGCGTCGACCCACTTATTCTCTCCCAAACGTATCGCCGCCCACGAACCCGCTCGCCAGCTCGAATGCGCCGCCATGTTACAAACCATTCACAATCAACAAACCCTTCACGGAGCCGTTTCGTTACGAAAACACCTCCAAGCCGCTGCCTTGAACAACGTGATGTGGAGCGTGTTTGGAAAGCGGTTTGACCCGACCGATTCCAAATTAGAAACGGTTCGAGAGTTGGTTCGTGAAGGGTTTGAGCTGCTCGGCGCGTTTAATTGGTCGGATTATCTCCCCTGGCTTAGTGGATTCTACGACCCGAGCCGTATCCGCCAGCGCTGCGCCGAACTCGTCCCTAAAGTTAATGAATTTGTCCGCGGCGTAATTGATGAGCACCGCCGCGGTGAAGCTCCGTCGGATGATTCCGATTTTGTCGACGTTTTGCTGTCTCTCGACGGCGATGAAAAGCTGAACGAGGATGACATGGTGGCTGTTTTATGGGAAATGATTTTCCGGGGTACGGACACGACGGCGCTGCTGACGGAGTGGGTGGTGGCGGAGTTAATTTTACATCCGGAGATACAGGGAGAAGTCGCGAGGGAAATCGCCACCGCTGTGGGCGGAAGGAGCCTCTCAGACGCTGACGTGGCGAATCTTCCGTACTTACAGGCGGTGGTGAAGGAGACGCTACGACTACACCCACCAGGGCCACTACTCTCGTGGGCCCGCCTCTCTTCGTCGGATGTCCACCTCAGCAACGGCATGCTTATCCCAGAGAACACAACCGCCATGGTCAACATGTGGGCCATAACGCACGACCCCCACGTATGGGAAGATCCACACGTGTTCAACCCAGGGAGGTTCGTGGGTGCTGACGTGGACGTCAGAGGCTGCGACCTCCGACTAGCGCCGTTCGGAGCAGGGCGGAGGGTGTGCCCAGGGAAGAATCTTGGACTGGTCACGGTCACTCTGTGGGTGGCTAAGCTGGTCCATCACTTTAAATGGGGTCCGGACCCAGCCGCCCCTGTGGACCTGAGTGAGGTGCTGAAGCTCTCGTGTGAGATGAAGCATCCGCTAAGTGCGGTGGCAGTGACAAGAGAAAATGGATTTTATTAG 1560 57.88 METPLGGSSPXPHFLPSQSSPLLLLLAFLSLAFLSALLATAGTAWPNGRNHRGQRPIPGARGLPILGSLFSLTHGLPHRTLAAMAAARGSPQLMAFSLGSTPVVVTSDPHTAKEILTSPHFANRPLKQSAKSLMFGRAIGFAPNGTYWRLLRRIASTHLFSPKRIAAHEPARQLECAAMLQTIHNQQTLHGAVSLRKHLQAAALNNVMWSVFGKRFDPTDSKLETVRELVREGFELLGAFNWSDYLPWLSGFYDPSRIRQRCAELVPKVNEFVRGVIDEHRRGEAPSDDSDFVDVLLSLDGDEKLNEDDMVAVLWEMIFRGTDTTALLTEWVVAELILHPEIQGEVAREIATAVGGRSLSDADVANLPYLQAVVKETLRLHPPGPLLSWARLSSSDVHLSNGMLIPENTTAMVNMWAITHDPHVWEDPHVFNPGRFVGADVDVRGCDLRLAPFGAGRRVCPGKNLGLVTVTLWVAKLVHHFKWGPDPAAPVDLSEVLKLSCEMKHPLSAVAVTRENGFY 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8558485 8560743 - CmaCh20G011000.1 Cma20g01100 316914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01100 519 Pfam Cytochrome P450 58 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g01100 519 PANTHER CYTOCHROME P450 FAMILY 78 PROTEIN 23 516 - -
Cma20g01100 519 PANTHER CYTOCHROME P450 78A7-RELATED 23 516 - -
Cma20g01100 519 Gene3D Cytochrome P450 47 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g01100 519 SUPERFAMILY Cytochrome P450 57 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g01100 519 PRINTS P450 superfamily signature 460 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g01100 519 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g01100 519 PRINTS P450 superfamily signature 372 383 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g01100 519 PRINTS P450 superfamily signature 451 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g01100 519 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 453 462 IPR017972 GO:0005506|GO:0016705
Cma20g01100 519 PRINTS E-class P450 group I signature 309 326 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g01100 519 PRINTS E-class P450 group I signature 371 389 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g01100 519 PRINTS E-class P450 group I signature 87 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g01100 519 PRINTS E-class P450 group I signature 450 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g01100 519 PRINTS E-class P450 group I signature 329 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g01100 519 PRINTS E-class P450 group I signature 460 483 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g01100 519 PRINTS E-class P450 group I signature 202 220 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma20g01100 519 PRINTS E-class P450 group I signature 414 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00699 Cma-Chr18:6378834 Cma20g01100 Cma-Chr20:8558485 4.78E-163 dispersed
Cma20g01100 Cma-Chr20:8558485 Cma14g00501 Cma-Chr14:2445850 2.91E-88 dispersed
Cma20g01100 Cma-Chr20:8558485 Cma05g00453 Cma-Chr5:2082462 5.21E-170 transposed
Cma20g01100 Cma-Chr20:8558485 Cma17g00500 Cma-Chr17:3196541 7.65E-170 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01100 K20619 - csv:101214099 770.385