Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma20g01105 | ATGGGTTCCAAATCCCAACTCCTATTGAACCCACAACAAGCTTTGTTTGAAGATCAAGATCATCAAACACCACCAATTTCTCAAATGGGTTTCTTCAATTTCCCTTCAAACCCCTTTGAGAATCCAAATTTCTCAACCTCCAACAATAATAATAATTCCGACACCAACCTTAATCTCTCCGAAACCCTACTTTTTTCTTCTATGAATTTGCCCCTCAAGCCCTCCCCTTTCTATGAATTTGCACCTCCACACCTCCTTTCCTTGCAAACTTCCACTCCAAATCTATGGCCATGGGGAGAGATTGGGAAGAGAAGCAATGAAAATCAATTGGGAATTTCAACAATGAAGATGAAGAAGATCAAAGGAAGAAGAAGAGTTCGAGAGCCAAGATTTTCATTCAAAACCCTAAGCGATGTGGATGTTCTTGATGATGGTTACAAATGGCGGAAGTATGGCCAGAAAGTTGTCAAGAACACACAGCATCCTCGAAGCTATTACCGTTGTACACAAGATCACTGTAGGGTAAAGAAACGAGTGGAGAGATTAGCTGAGGATCCAAGAATGGTGATTACAACTTATGAAGGAAGACATGTTCATTCTCCTTCTCATGATTCTGAAGACTCTGAAGCTCAAACCCATCTCAATAATTTCTTCTGGTAA | 660 | 40.45 | MGSKSQLLLNPQQALFEDQDHQTPPISQMGFFNFPSNPFENPNFSTSNNNNNSDTNLNLSETLLFSSMNLPLKPSPFYEFAPPHLLSLQTSTPNLWPWGEIGKRSNENQLGISTMKMKKIKGRRRVREPRFSFKTLSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDSEDSEAQTHLNNFFW | 219 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 8639205 | 8641579 | - | CmaCh20G011050.1 | Cma20g01105 | 316919 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma20g01105 | 219 | PANTHER | WRKY TRANSCRIPTION FACTOR 13-RELATED | 46 | 213 | - | - | |
Cma20g01105 | 219 | Pfam | WRKY DNA -binding domain | 143 | 199 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma20g01105 | 219 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 46 | 213 | IPR044810 | GO:0003700 | |
Cma20g01105 | 219 | Gene3D | WRKY domain | 129 | 195 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma20g01105 | 219 | SMART | WRKY_cls | 142 | 201 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma20g01105 | 219 | SUPERFAMILY | WRKY DNA-binding domain | 135 | 201 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma20g01105 | 219 | ProSiteProfiles | WRKY domain profile. | 137 | 202 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g01052 | Cma20g01105 | CCT | |
Cma02g00592 | Cma20g01105 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma14g02165 | Cma-Chr14:14852671 | Cma20g01105 | Cma-Chr20:8639205 | 1.31E-47 | dispersed | |
Cma20g01105 | Cma-Chr20:8639205 | Cma17g00379 | Cma-Chr17:2109793 | 8.00E-36 | dispersed | |
Cma02g00592 | Cma-Chr2:3501164 | Cma20g01105 | Cma-Chr20:8639205 | 9.38E-91 | wgd | |
Cma20g01105 | Cma-Chr20:8639205 | Cma03g01052 | Cma-Chr3:7258119 | 1.69E-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37060 | PF03106 | WRKY | 3.40E-24 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma20g01105 | - | - | cmos:111434882 | 395.586 |