Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01105 ATGGGTTCCAAATCCCAACTCCTATTGAACCCACAACAAGCTTTGTTTGAAGATCAAGATCATCAAACACCACCAATTTCTCAAATGGGTTTCTTCAATTTCCCTTCAAACCCCTTTGAGAATCCAAATTTCTCAACCTCCAACAATAATAATAATTCCGACACCAACCTTAATCTCTCCGAAACCCTACTTTTTTCTTCTATGAATTTGCCCCTCAAGCCCTCCCCTTTCTATGAATTTGCACCTCCACACCTCCTTTCCTTGCAAACTTCCACTCCAAATCTATGGCCATGGGGAGAGATTGGGAAGAGAAGCAATGAAAATCAATTGGGAATTTCAACAATGAAGATGAAGAAGATCAAAGGAAGAAGAAGAGTTCGAGAGCCAAGATTTTCATTCAAAACCCTAAGCGATGTGGATGTTCTTGATGATGGTTACAAATGGCGGAAGTATGGCCAGAAAGTTGTCAAGAACACACAGCATCCTCGAAGCTATTACCGTTGTACACAAGATCACTGTAGGGTAAAGAAACGAGTGGAGAGATTAGCTGAGGATCCAAGAATGGTGATTACAACTTATGAAGGAAGACATGTTCATTCTCCTTCTCATGATTCTGAAGACTCTGAAGCTCAAACCCATCTCAATAATTTCTTCTGGTAA 660 40.45 MGSKSQLLLNPQQALFEDQDHQTPPISQMGFFNFPSNPFENPNFSTSNNNNNSDTNLNLSETLLFSSMNLPLKPSPFYEFAPPHLLSLQTSTPNLWPWGEIGKRSNENQLGISTMKMKKIKGRRRVREPRFSFKTLSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDSEDSEAQTHLNNFFW 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8639205 8641579 - CmaCh20G011050.1 Cma20g01105 316919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01105 219 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 46 213 - -
Cma20g01105 219 Pfam WRKY DNA -binding domain 143 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma20g01105 219 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 46 213 IPR044810 GO:0003700
Cma20g01105 219 Gene3D WRKY domain 129 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma20g01105 219 SMART WRKY_cls 142 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma20g01105 219 SUPERFAMILY WRKY DNA-binding domain 135 201 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma20g01105 219 ProSiteProfiles WRKY domain profile. 137 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01052 Cma20g01105 CCT
Cma02g00592 Cma20g01105 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g02165 Cma-Chr14:14852671 Cma20g01105 Cma-Chr20:8639205 1.31E-47 dispersed
Cma20g01105 Cma-Chr20:8639205 Cma17g00379 Cma-Chr17:2109793 8.00E-36 dispersed
Cma02g00592 Cma-Chr2:3501164 Cma20g01105 Cma-Chr20:8639205 9.38E-91 wgd
Cma20g01105 Cma-Chr20:8639205 Cma03g01052 Cma-Chr3:7258119 1.69E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37060 PF03106 WRKY 3.40E-24 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01105 - - cmos:111434882 395.586