Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01106 ATGGAAGTTTCTGCTACAAAAAGAAGGCTCCTCAAAGTCATCTTCCTCGGTGACAGTGGAGTCGGGAAAACCTCTTTGATGAATCGATATGTGTATAAGAAGTTCTGTCTACAGTATAAAGCAACGATTGGTGCTGACTTTATGACAAAGGAGCTACAAATTGATGACCAGCTTGTCACATTGCAAGTTTGGGATACAGCAGGGCAGGAAAGGTTTCAGAGTCTAGGGGCTGCATTTTACAGAGGAGCAGATTGCTGTGTTTTTGTCTATGATGTGAATGTGGTCAAATCATTTGAATCACTCAGCAGTTGGCATGAGGAGTTTCTCAAGCAGGCAGGGCCAGCTGATCCAAAAGCATTCCCGTTCCTATTACTCGGGAACAAGATCGATGTAGACAATGGATGTAGCCGAGCTGTCTCAGAGAAAAGGGCAAGACAATGGTGTAATTCCAGGGGAAACATGCCATACTTTGAGACCTCAGCAAAAGAGGATTATAATGTCAATGAAGCATTTCTATGCATTGCAAAAGCTGCATTAACCAATGAAGAAGAGCAGGACCATTACTTTGAAAGTATCTCAGACTCTGTTTCAGAAGTGGAGGCAGGAGGCGGCGGAGGAGGCGGAGGAGGAGGCGGAGGAGGCTGTTCTTGTTAA 654 44.95 MEVSATKRRLLKVIFLGDSGVGKTSLMNRYVYKKFCLQYKATIGADFMTKELQIDDQLVTLQVWDTAGQERFQSLGAAFYRGADCCVFVYDVNVVKSFESLSSWHEEFLKQAGPADPKAFPFLLLGNKIDVDNGCSRAVSEKRARQWCNSRGNMPYFETSAKEDYNVNEAFLCIAKAALTNEEEQDHYFESISDSVSEVEAGGGGGGGGGGGGGCSC 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8683216 8687446 - CmaCh20G011060.1 Cma20g01106 316920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01106 217 ProSiteProfiles small GTPase Ras family profile. 6 197 IPR001806 GO:0003924|GO:0005525
Cma20g01106 217 SMART ran_sub_2 16 202 - -
Cma20g01106 217 ProSiteProfiles small GTPase Rab1 family profile. 4 215 - -
Cma20g01106 217 SMART rab_sub_5 11 181 - -
Cma20g01106 217 PANTHER RAB FAMILY 1 206 - -
Cma20g01106 217 SMART ras_sub_4 8 181 - -
Cma20g01106 217 TIGRFAM small_GTP: small GTP-binding protein domain 11 171 IPR005225 GO:0005525
Cma20g01106 217 PANTHER - 1 206 - -
Cma20g01106 217 ProSiteProfiles small GTPase Rho family profile. 4 181 - -
Cma20g01106 217 SMART rho_sub_3 13 181 IPR001806 GO:0003924|GO:0005525
Cma20g01106 217 Gene3D - 4 194 IPR027417 -
Cma20g01106 217 CDD Rab7 11 184 - -
Cma20g01106 217 Pfam Ras family 12 178 IPR001806 GO:0003924|GO:0005525
Cma20g01106 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 184 IPR027417 -
Cma20g01106 217 PRINTS Transforming protein P21 ras signature 11 32 - -
Cma20g01106 217 PRINTS Transforming protein P21 ras signature 34 50 - -
Cma20g01106 217 PRINTS Transforming protein P21 ras signature 52 74 - -
Cma20g01106 217 PRINTS Transforming protein P21 ras signature 118 131 - -
Cma20g01106 217 PRINTS Transforming protein P21 ras signature 156 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01106 K07897 RAB7A; Ras-related protein Rab-7A - csv:101212418 376.711
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00659 Cma-Chr19:6946081 Cma20g01106 Cma-Chr20:8683216 1.03E-97 dispersed
Cma20g01106 Cma-Chr20:8683216 Cma16g00769 Cma-Chr16:4221475 4.68E-39 dispersed
Cma20g01106 Cma-Chr20:8683216 Cma20g01109 Cma-Chr20:8706549 1.85E-12 proximal
Cma02g00597 Cma-Chr2:3539307 Cma20g01106 Cma-Chr20:8683216 7.23E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1154 . . . . . . . . . Cmo20g01136 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g0197 . . . Cma20g01106 . . Cpe05g01103 . Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . . . . . . . . . . . .
Vvi7g1168 . Blo16g00503 . . . . . . . . . Cma20g01106 . Car20g00951 . . Cpe16g00052 . . . . . . . . . . . . . . . . Cone8ag0070 . . . . . . . Bda11g01339 . . . . Bma06g00545 Sed05g3820 . Cmo20g01136 . . . . . . Bhi10g02307 Tan07g0957 . . Hepe10g0784 . . Cla02g00101 Cam02g0107 Cec02g0108 Cco02g0100 Clacu02g0104 Cmu02g0098 Cre02g0439 Lsi10g00673 Csa02g01557 . Cme11g00207
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002492 2 2 2 2 2 1 3 1 1 1 1 1 2 2 2 2 1 2 2 1 2 2 2 2 2 2 2 5 4 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g01106 Cma_Chr20 FPKM 1.716586 3.001094 5.042139 3.879903 13.504015 15.689608 12.586696 0.968716 1.238522 1.26071