Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01115 ATGGCCTCCTCTTCAAATCCCATCTCTCTCCTCACATTCTTCTCTCTCCTCTTCCTCTTCCTCTTCACCTCGTCCTCCGCCGTTCCGACGGTCGAGGTTTGCCAATCCGCAACCTCCCCGTCCTTCTGCAAATCCTTCCTCCCCTCCTCCCCGGCCTCCGTCCACTCCCATTGTCGCTACACTCTCCATCACGCCCTGGTCCAAGCGCGCACCTTCATAACCCTCGTCGATCTCCAACTTACCCTCTTGCCTTCCTTCTCGGCCCTCCATGATTGCCGCTCCCTCGCCATGGCCAACCTCGACTTCATATCGAGCACCGTCAACACCGTCAACACCACGACCAATGCCCTTCCGTTTTACCAAGCCGATGAGATGATATCGTTGCTTAGCGCAGTGATCACCAATGTAGATACTTGTCATGATGGCTTAGCGGGCTCGGGCTTGGGCTTGGTTGATAAGGTGGTGAAAGCTATCTCCTTTGATAGACAGCTTTATAGTTTGTACCTTTCTTTGTTCAAAATGGGTTGGGTTTCTAAGACCATGAAGGCTCCTAAGTTGCCAAAAACTAACCATTTTGGGTTCGGGAATGGTCCGTTGAAGCTCAAAATGTCGCCCAAGGACCGCGCCTATTATGAGCGGTTGATGCATGGGAAGAAGCCAGCGGCTCGAAGGCTTCTTCAGACCAATAATGCTGATGATGGCATTTTGGTCAATGGTGTTGTTGCTGTGGACCAAAATGGAGCATATGACTTCACCACCATCAATGACGCCATTGCGGCAGCTCCCAACAAATCCACCGCCGCGAACGGGTACTTTTTGATCTTCGTCACCGCCGGGATATACATGGAAAGCGTAGTGGTTCCGAAAAGTAAAAAGTACGTGTTGATGATCGGAGAAGGTAACAACAGAACTATCATCACCGGGAACAAGAACGTCGTTGATGGCTCTACTACTTTCAATAGCGCGACCGTCATCGTGGAGGGAACAGGGTTCTTCGGGGCAAACCTAACCATCACCAATACCGCCGGCGCCATCAAACACCAAGCCGTGGCGTTGCGAGTGAGCGCCGACATGACAACGTTCTACAGCTGCATATTCGAAGGATACCAAGACACTCTATATGCTCACTCCCTCCGCCAATTCTACCGAGAATGCGACATCTATGGCACGGTTGACTTCATCTTCGGCAACGCTGCTGTCGTCTTACAAAACTGCAACATCTACGCTCGCCTCCCTCTGAGCGGGCAATTCAACGCCCTCACAGCGCAGGGCCGGACCGACCAGAATCAGAACACTGGAATCTTCATTCACAAATGCACCATCAAACCGACTCCCGACCTCGCCGCTAGCCCCACCACCAAGAGCTACTTAGGGAGGCCGTGGAAGGAATTTTCTCGAACGGTTTACATGCAGTCGTTTATCGACGCCTTCATCGACCCTGCAGGGTGGAAGGAGTGGGACGGGACTTTGAATTTGAACACTTCGTATTACGCCGAGTTTGATAACTCCGGGCCGGGTTCCGACACTTCGCGGCGGGCGCAGTGGGCGGTTGGGGTAATCAACGCCACCGTTGCTAATATCTTCACGGTGTCTGAAATCTTGGCCGGAGATCAATGGCTGCCGCCCACCGCCGTGCCCTACAGCGGCGGTTTGATATCATAA 1662 52.89 MASSSNPISLLTFFSLLFLFLFTSSSAVPTVEVCQSATSPSFCKSFLPSSPASVHSHCRYTLHHALVQARTFITLVDLQLTLLPSFSALHDCRSLAMANLDFISSTVNTVNTTTNALPFYQADEMISLLSAVITNVDTCHDGLAGSGLGLVDKVVKAISFDRQLYSLYLSLFKMGWVSKTMKAPKLPKTNHFGFGNGPLKLKMSPKDRAYYERLMHGKKPAARRLLQTNNADDGILVNGVVAVDQNGAYDFTTINDAIAAAPNKSTAANGYFLIFVTAGIYMESVVVPKSKKYVLMIGEGNNRTIITGNKNVVDGSTTFNSATVIVEGTGFFGANLTITNTAGAIKHQAVALRVSADMTTFYSCIFEGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYARLPLSGQFNALTAQGRTDQNQNTGIFIHKCTIKPTPDLAASPTTKSYLGRPWKEFSRTVYMQSFIDAFIDPAGWKEWDGTLNLNTSYYAEFDNSGPGSDTSRRAQWAVGVINATVANIFTVSEILAGDQWLPPTAVPYSGGLIS 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8798768 8801661 + CmaCh20G011150.1 Cma20g01115 316929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01115 553 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 16 550 - -
Cma20g01115 553 Gene3D - 237 551 IPR012334 -
Cma20g01115 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 174 IPR035513 -
Cma20g01115 553 Pfam Pectinesterase 241 537 IPR000070 GO:0030599|GO:0042545
Cma20g01115 553 ProSitePatterns Pectinesterase signature 2. 387 396 IPR033131 -
Cma20g01115 553 Pfam Plant invertase/pectin methylesterase inhibitor 32 155 IPR006501 GO:0004857
Cma20g01115 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 174 IPR035513 -
Cma20g01115 553 PANTHER PECTINESTERASE 16 550 - -
Cma20g01115 553 SUPERFAMILY Pectin lyase-like 237 550 IPR011050 -
Cma20g01115 553 CDD PMEI-like_3 33 176 - -
Cma20g01115 553 SMART PMEI_2 23 171 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00442 Cma-Chr8:2494265 Cma20g01115 Cma-Chr20:8798768 0 dispersed
Cma17g01065 Cma-Chr17:7621802 Cma20g01115 Cma-Chr20:8798768 0 dispersed
Cma18g00970 Cma-Chr18:8221292 Cma20g01115 Cma-Chr20:8798768 9.34E-151 dispersed
Cma20g01115 Cma-Chr20:8798768 Cma17g01067 Cma-Chr17:7630092 3.74E-122 dispersed
Cma02g00604 Cma-Chr2:3612270 Cma20g01115 Cma-Chr20:8798768 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01115 K01051 - csv:101216984 867.455