Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01123 ATGTCATCGTCGAATTCACCATGTGCGGCGTGTAAATTTCTTCGGCGAAAATGCACACAAGAATGCGTATTCGCGCCGTACTTCCCACCGGATCAGCCGCAGAAATTCGCTAATGTTCACAAGGTGTTTGGCGCAAGCAACGTGGCGAAGCTTTTGAATGAGTTGAACGCGTCGCAGCGTGAAGACGCAGTGAACTCATTAGCCTATGAGGCAGAGTTTCGTCTGCGAGACCCAGTGTACGGATGTGTCGGCCTTATCTCTGTCCTACAACACAAGCTAAAGCAAATGCAAAGCGACCTGTACAATGCCAAAAAGGAACTGGCCAGTTATGTTGGCCCTCAAGCAATGATTCCAATTCTTCAGCCTTCCACTGCCATTATGACCTCTAACCCTCAAGGACCCGTCACTAGCCCTTCCTCCTCCGTCCTACTTCCTTACAACATGTCCCCCATGTTTGGGATTCCCTCTTCTGGCGGCGGTGGCTCCTCCCAACAGATGCTCATTCGTGAATCGCCCCATCAGCAACAACAACATCACCACCAGATACAGCAGCAGCAGCAGTTGTTTGAGGCACAGCAATTGGCTGCGGCAGTGGCGGCCAGAGAGCAGCAAGAAATGTTCAGAGCGTACGAGCAGAAGCAAACCCAGCAGCATCAGCAGCAACAGCATTCTCCTTCCCAACGCCAGCACGAGCTCTTGAGGTTCAATGGGTTTGACCCGGCTGGTGTTGGTGCCGGTGCCGGTACCGGTGCTGGTGGGTTTAATAATCAGATGAATTCGCCTTCAGATTTGACATTGGGAACTTTTCCAGACAATAGCTACCAAATTCAAACGCAACCAGAACACTCCCATTCCCATTCCCATTCCCATTCCCACCATCATCATCCGCTTCAAGTACAGCTATTTCCTCAACCTCAGCAAACTCAGCTTGACCAATCACAGCAACAACAGCAGCAACCCCATCCACACCGATCGCAGCAAATCCACAAGCCTGAAGCTACTGCAGATGATGGTAGGAATATTAACATTGGACCCTCTTGTTGA 1044 50.77 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNASQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLYNAKKELASYVGPQAMIPILQPSTAIMTSNPQGPVTSPSSSVLLPYNMSPMFGIPSSGGGGSSQQMLIRESPHQQQQHHHQIQQQQQLFEAQQLAAAVAAREQQEMFRAYEQKQTQQHQQQQHSPSQRQHELLRFNGFDPAGVGAGAGTGAGGFNNQMNSPSDLTLGTFPDNSYQIQTQPEHSHSHSHSHSHHHHPLQVQLFPQPQQTQLDQSQQQQQQPHPHRSQQIHKPEATADDGRNINIGPSC 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8866401 8867444 - CmaCh20G011230.1 Cma20g01123 316937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01123 347 MobiDBLite consensus disorder prediction 153 188 - -
Cma20g01123 347 MobiDBLite consensus disorder prediction 210 229 - -
Cma20g01123 347 MobiDBLite consensus disorder prediction 156 188 - -
Cma20g01123 347 MobiDBLite consensus disorder prediction 252 282 - -
Cma20g01123 347 MobiDBLite consensus disorder prediction 300 324 - -
Cma20g01123 347 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Cma20g01123 347 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 1 309 - -
Cma20g01123 347 Coils Coil 86 106 - -
Cma20g01123 347 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Cma20g01123 347 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 309 - -
Cma20g01123 347 MobiDBLite consensus disorder prediction 237 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00742 Cma-Chr5:4237544 Cma20g01123 Cma-Chr20:8866401 1.32E-59 dispersed
Cma11g00077 Cma-Chr11:374968 Cma20g01123 Cma-Chr20:8866401 1.01E-49 dispersed
Cma13g00866 Cma-Chr13:7097857 Cma20g01123 Cma-Chr20:8866401 1.81E-47 dispersed
Cma15g00140 Cma-Chr15:668330 Cma20g01123 Cma-Chr20:8866401 6.72E-46 dispersed
Cma15g00157 Cma-Chr15:729704 Cma20g01123 Cma-Chr20:8866401 8.76E-47 dispersed
Cma18g00185 Cma-Chr18:954033 Cma20g01123 Cma-Chr20:8866401 4.44E-47 dispersed
Cma20g01123 Cma-Chr20:8866401 Cma10g00105 Cma-Chr10:429384 8.14E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37062 PF03195 LOB 1.80E-41 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01123 - - cmos:111434896 496.508