Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g01145 ATGTCACAACAAGACTACCAGCAGGCCGCGGCGGCGGCGGCGGCGGCGGCAGGCTTCTTCACGCCCTTCTCCAATGGCTTCGATAGATCCTCCACTGCCCACCAAGACCCTCAGCAACACTACCAACACATAGCCCACCAGATCCGTAAGGAGAAGCTTCGACTTCAAGGCTTCCACCCGCCGCCCCATCCGCCATCGTTAGTCGGAATTGACGACGACGAAGATGACCAATCCGCCGGTGCTGCGGGGCTCCACCACGTCTACGATTCGGCTGGAATTTTATCGGAAATGTTCAATTTTCCCCCGCCTCCACCCCCACCGCCGCCACAGACCGAGTTGTATGGGAATCGGGAAGCGATGAACGCAGCTGACTCAGCGGTTGCCATGCAGCTTTTTCTGATGAACCCTAACCCTCGCTCGCCGTCTCCACCGCCGCCACCGGCAGTCTCGTCCACGCTTCATATGCTTCTTCCAAACCCAGCTTCAGGAGGGTCTTTTGGACAATTCACGTGGGGTGTGGTTCCGGAGCAACAAACAGGAGACCATTCTTCTTCAAACCCTAATGAAGGCCGTCTTTCGCTGTCGTTATCATCCTCTTTGGAGGCTGCAAAAGCTGAGGAATTGAGAATGGGTGACAGCGCCAGTGGGTTACTTTATCAAACCCACCATCACCCCCAACATGTTCATGTCGGAATTGGGTCGTCTAATCCACTGGGAGTTGTCAACTTGTTGAGAAACTCAAAGTATGTTAAAGCTGCACAGGAATTATTGGAGGAGTTTTGTAGCGTTGGAAGAGGTCAGTTTAAGAGGAACAAATCAAATTTGCCCTCCAACTCCAATTCCCACGGCGGTGACGGCGCCGGAGTCTCTTCCTCCGCCGCAAAAGATCATCAGCTGCAACCAGCTTTGTCAGCAGCTGATAGAATCGAACACCAGAGGAGGAAGGTCAAACTGTTGTCTATGCTTGATGAGGTGGATCGACGATACAACCATTACTGCGAGCAGATGCAATTGGTGGTGAATTCATTCGAGGAGGTGATGGGGTTGGGGGCGGCGGTGGCATACACGGCGTTGGCGCAGAAGGCGATGTCGAGGCATTTCAGGTGTCTGAAGGACGCAATAGTAGGGCAGCTGAAGCAAAGCTGCGAGATGTTAGGGGACAAAGATGGGGGAAGAGCCTCTGGAATAACAAAGGGAGAGACTCCAAGGCTTAAGCTGTTGGAGCAAAGGCTTAGGCAGCAACGAGCCTTCCACCAAATGGGCATCATGGATCAAGAAGCTTGGCGTCCTCAACGCGGCCTCCCCGAACGCTCCGTCAACATCTTGCGCGCCTGGCTCTTTGAGCATTTCCTTCATCCGTACCCTAGTGATGCTGATAAGCATTTGCTGGCTAGGCAGACTGGTTTATCAAGAAACCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAGGCCAAAGAAGAAGAAGAAGATGATGATGATGATGATGAGGATAATACAGATGAGGACACAAAAACCAACCCCCATCAAATTACCTCTAATGCCCTTTCACAAACTCCAACGCCGCCTTCCTCCTCCGCCGCAGCTATACAGCCATTGCCGCAGTCCGACGCCACTCCACCACCACCACCCAAAGGACTCGATCACACCACCCTAAGCCATCCTCCACCCTTCTCACAAAGCCAACAATATTCCTCCGCCGCCGCCGCCGCCGCCGCAACCCAGGCGCCGCCAACTCCATCGATGGTGGCAAACTGCTTTCCCGCCACCCACTATGATTCAGAGCTGCAGGACACGTGTCAGCGAGTCAGCGTTCTCACTGCACCTGATCATCAATTCGGGACCACAAACACCTCTGCCACGTCTGACATCCAGGGGCCCACCACGCTTATAAGGTTCGGGACCACCACTGGTGACGTGTCGCTCACATTAGGTTTACGCCACGCCGGCAATATCCCCGATAAAAACCCTTCTTTCTCCCTGAGATCCGAGTTTGGCGAGTGTTAG 2046 53.81 MSQQDYQQAAAAAAAAAGFFTPFSNGFDRSSTAHQDPQQHYQHIAHQIRKEKLRLQGFHPPPHPPSLVGIDDDEDDQSAGAAGLHHVYDSAGILSEMFNFPPPPPPPPPQTELYGNREAMNAADSAVAMQLFLMNPNPRSPSPPPPPAVSSTLHMLLPNPASGGSFGQFTWGVVPEQQTGDHSSSNPNEGRLSLSLSSSLEAAKAEELRMGDSASGLLYQTHHHPQHVHVGIGSSNPLGVVNLLRNSKYVKAAQELLEEFCSVGRGQFKRNKSNLPSNSNSHGGDGAGVSSSAAKDHQLQPALSAADRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQLVVNSFEEVMGLGAAVAYTALAQKAMSRHFRCLKDAIVGQLKQSCEMLGDKDGGRASGITKGETPRLKLLEQRLRQQRAFHQMGIMDQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEAKEEEEDDDDDDEDNTDEDTKTNPHQITSNALSQTPTPPSSSAAAIQPLPQSDATPPPPPKGLDHTTLSHPPPFSQSQQYSSAAAAAAATQAPPTPSMVANCFPATHYDSELQDTCQRVSVLTAPDHQFGTTNTSATSDIQGPTTLIRFGTTTGDVSLTLGLRHAGNIPDKNPSFSLRSEFGEC 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 9080279 9083986 + CmaCh20G011450.1 Cma20g01145 316959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g01145 681 Pfam Associated with HOX 244 375 IPR006563 -
Cma20g01145 681 SUPERFAMILY Homeodomain-like 429 495 IPR009057 -
Cma20g01145 681 SMART prehox3 238 376 IPR006563 -
Cma20g01145 681 MobiDBLite consensus disorder prediction 137 151 - -
Cma20g01145 681 MobiDBLite consensus disorder prediction 495 586 - -
Cma20g01145 681 MobiDBLite consensus disorder prediction 519 546 - -
Cma20g01145 681 MobiDBLite consensus disorder prediction 496 514 - -
Cma20g01145 681 MobiDBLite consensus disorder prediction 135 156 - -
Cma20g01145 681 Pfam Homeobox KN domain 445 484 IPR008422 GO:0003677|GO:0006355
Cma20g01145 681 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 72 668 - -
Cma20g01145 681 MobiDBLite consensus disorder prediction 268 297 - -
Cma20g01145 681 CDD homeodomain 428 489 IPR001356 GO:0003677
Cma20g01145 681 MobiDBLite consensus disorder prediction 566 585 - -
Cma20g01145 681 ProSiteProfiles 'Homeobox' domain profile. 425 488 IPR001356 GO:0003677
Cma20g01145 681 SMART HOX_1 428 492 IPR001356 GO:0003677
Cma20g01145 681 MobiDBLite consensus disorder prediction 548 563 - -
Cma20g01145 681 Gene3D - 431 493 - -
Cma20g01145 681 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 72 668 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01431 Cma-Chr2:8246912 Cma20g01145 Cma-Chr20:9080279 2.05E-101 dispersed
Cma07g00746 Cma-Chr7:3306916 Cma20g01145 Cma-Chr20:9080279 4.96E-170 dispersed
Cma13g00244 Cma-Chr13:1997873 Cma20g01145 Cma-Chr20:9080279 6.81E-68 dispersed
Cma15g01244 Cma-Chr15:7909711 Cma20g01145 Cma-Chr20:9080279 2.32E-97 dispersed
Cma20g00823 Cma-Chr20:3913634 Cma20g01145 Cma-Chr20:9080279 9.77E-85 dispersed
Cma02g00561 Cma-Chr2:3177948 Cma20g01145 Cma-Chr20:9080279 0 wgd
Cma20g01145 Cma-Chr20:9080279 Cma03g01027 Cma-Chr3:7153378 3.37E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37066 PF07526 POX 4.90E-50 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g01145 - - cmax:111470356 1217.6