Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00005 ATGGGTACGAACCAAAATACCAAATCCGCACACAATGAAAGCGTTGCTCCTGCAACTGCTTTGGCTTACCTTGATCCTAAATACTGGGACGAGCGTTTTTCTAAGGAAGAGCATTATGAATGGTTTAAGGATTATTCTCATTTTCGTCATCTCATACTTCCTCTTCTCAAACCTGATTCATCAGTATTGGAATTGGGTAGTGGAAATTCGAAACTTTCTGAGGAATTGTACAACGATGGAATAACTCATATAACATGCATTGATTTGTCTGCTGTTGCCGTCGAGAAAATGCAAAGACGTTTACGTTTGAAGGGTATGAAAGAAATAAAGGTGCTAGAAGCTGACATGCTAGACATGCCTTTTGGCAATGAGTGTTTTGATGTCGTTGTCGAGAAAGGAACCATGGATGTTCTGTTCGTGGATGGTGGTGACCCATGGAATCCTCAACCATCCACGCGAGCGAAGGTCATGGCAATGCTGGAAGGTGTTCATAGGGTTTTGAAGAAAGATGGCATTTTTGTCTCAGTTACATTTGGCCAGCCGCATTTCAGGCGTCCCTTATTTAGTGCTCCAGAATTTACATGGTCATTTGAGTGCAGTACTTTTGGCGATGGATTTCACTACTTCCTCTATACCTTGCGTAAGGGAAGGCGATTGCCTAGTGATAAAGGTGAGGGTGAGAGGTTTGATGAGCCATCAATCTGTTTACTTCAAGACGAGCTAGAGGGTGAAGATTACATGTTCAGAACCGACGTTGATGAGCTGAATTGCTAG 774 42.89 MGTNQNTKSAHNESVAPATALAYLDPKYWDERFSKEEHYEWFKDYSHFRHLILPLLKPDSSVLELGSGNSKLSEELYNDGITHITCIDLSAVAVEKMQRRLRLKGMKEIKVLEADMLDMPFGNECFDVVVEKGTMDVLFVDGGDPWNPQPSTRAKVMAMLEGVHRVLKKDGIFVSVTFGQPHFRRPLFSAPEFTWSFECSTFGDGFHYFLYTLRKGRRLPSDKGEGERFDEPSICLLQDELEGEDYMFRTDVDELNC 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43014 46131 - MELO3C018408.2.1 Cme01g00005 316981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00005 257 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 25 212 IPR029063 -
Cme01g00005 257 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 17 248 - -
Cme01g00005 257 Pfam Methyltransferase domain 58 178 IPR025714 -
Cme01g00005 257 PANTHER EEF1A LYSINE METHYLTRANSFERASE 4 17 248 - -
Cme01g00005 257 CDD AdoMet_MTases 62 178 - -
Cme01g00005 257 Gene3D Vaccinia Virus protein VP39 21 227 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00005 K22857 EEF1AKMT4; EEF1A lysine methyltransferase 4 [EC:2.1.1.-] - csv:101212540 515.768
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00005 Cme-Chr1:43014 Cme06g00825 Cme-Chr6:5636324 1.95E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g545 . . . . . Bpe12g00072 . . Cmo19g00656 . . . . . Sed10g2078 . Cpe15g00519 Bhi05g01180 Tan02g0850 Cmetu01g2149 . Hepe02g0546 . . Cla02g00555 Cam02g0580 Cec02g0582 Cco02g0592 Clacu02g0580 Cmu02g0576 Cre02g0906 Cone12ag1129 . . . . Csa07g00828 . Cme01g00005 . Blo13g00558 Bda15g00020 . . . . . . . . . Cma19g00645 . . . . . . . . . . . . . . . . . . Lsi11g01056 . Chy01g00006 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002707 3 2 3 1 1 2 1 1 2 2 1 2 1 2 2 2 2 2 2 1 2 2 2 2 1 2 1 4 4 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00005 Cme_Chr01 FPKM 10.7343 11.359478 9.643369 9.066084 7.773134 9.500317 9.511503 5.134396 5.484964 3.866296