Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00015 ATGAAGGCCATGGCGACCTTGCAGGATCTAATCGAGGAGGCTAAACTTCGAACGGTTTGGTGGGCTTTGTGTATTTTCGCGATTTCATACTTTTTGACTCATACTAGTAAGTCAATGTGGATGAATGTGCCCCTAGCAATTCTATTAGTTTCTGCATTACGCATCCTGTTCAATGAGGTAGAGTTTCATAGAAAGGTCCGACCTATTCATCAACAGACATACTTATCTCACCTGGAGAAGAAGCAGTTATCTGTTAATGACTCGCGCCTTTCTTCAGCACTTCCTCCACCAAGATGGAAAAGGAAAATTGATTCTCCTGCTGTGGAAGCTGCAATGAAGGATTTCATAGATAAAATACTGAAGGATTTTGTCGTTGATTTATGGTATTCAGAAATAACCCCAGATAAAGAGTTTCCTGAGCAGATACATGCGTTAATCATGGACGCCCTTGGTGAGATAGCAGTTAGGGTGAAAGAGATAAACCTTGTTGACTTGCTCACTAGGGATGTTGTTGATTTAGTAGGTGATCACTTGGACCTTTTTAGAAGAAACCAAGCTGCCATCGGTGTCGATGTTATGGGAACGCTGTCTTCTGAGGAGAGAGATGAAAGGTTGAAACACCATCTTATGGCTTCGAAGGAGCTTCATCCAGCATTGGTGTCTCCTGAGAGTGAGTACAAGGTCCTTCAACGGCTCATGAGTGGACTGTTGACTTCAGTACTGAGACCAAGAGAAACCCAATGTCCTGTTGTTCGATCCATTGCTCGAGAACTTTTGACATGTTTGGTGGTGCAACCTCTTATGAATTTTGCAAGTCCTGGGTGCATAAATGAACTGATTGAATGTATAGTCCTTGCCACTAGAGCTGAGAACGACTCTGTGATAGGCGGTCAACAACAAACTTACTCTTCAGATCTTGACAAAGACCGTTCTTCTACTGCTGGATTTGTACATGATGAAGATATGAACAAAAGGAACTCATCTTTAAATCCTGGGAGTGGTTCAGAGCTCACGAAATTTAACAATAAAAAAGAAATAAGCTCAGATTACATGTTCCAGGATGAGCCTTTGCAAATGAGACATGGTGATTGGGGCCGTGCATTAAATGCAGCTACCCAAAGGAGAACTGAAGTTCTTATGCCCGAAAATCTTGAAAACATGTGGACTAAAGGACGAAACTATAAGAAGAAAGAAAATAAGATCATTAAAGTAGGAGCTTCTGAGCCTATGGCTTCAACAAAGAATTATGGATCAAGTATCATGCAGCCTGCAACAAAAACAACAGCGAGGGATGAAATGTTGACTGGCAAGCATCATTCATCTACTGGGCCAGAAGAAAAGGCAATAGTTAGGAGAACACCTGCAAGACATTCTGATCTCCTTTTGACCTCCAAACCAGGTGACAAGAGCAAAATTGCTTTTCAGTCTTCTCTGGAACTTCAGAAGGATTCATCTATCGATGGCAAGTTTATTGCTAATGAACTAAAGGATGTTGACAATCTTACTCCTACTCCTGCTAGTGCAAACAAAATTCAACTCAAGAGATCCAATAGTACTTCTGCTTTGAAAACTGAAGTTAGTGTAGAAAAGCATTCCACAGAAGGTGGAAGATCTATTATATCAGATTTCTATGGTCCCAATTTTGGCAAGCACGTTGAAGAGCCCCTTTCTAAGAGTACCTCAGATATGGTGAGCCAAAAAGAAGGTCTACTTGTTCCCAAACTTAGGAGTCGGGTAATGGGCGCGTACTTTGAGAAGCTTGGTTCAAAATCTTTTGCTGTGTATTCAATAGCTGTTACAGATGCAAATAACAGAACTTGGTTTGTCAAGAGGAGGTACCGGAATTTTGAGCGACTCCATCGGCATCTTAAAGATATTCCCAACTATACACTGCATCTGCCTCCCAAACGAATATTTTCATCAAGCACAGAAGATGCTTTTGTTCACCAACGTTGCATTCAGCTTGACAAATATTTGCAGGAGCTATTGTCAATTGCAAATGTTGCCGAGCAGCATGAAGTATGGGACTTTCTAAGTGTTTCCTCAAAGAACTATTCATTTGGAAAATCTTCCTCAGTGATGAGAACATTAGCAGTCAACGTGGATGATGCTATGGATGACATTGTACGCCAGTTTAAAGGGGTTTCAGATGGTTTGATGCGTAAAGTTGTTGGTTCAACCTCACCTGATGAAGCTTGTGCCTCATCAAATTATGACCGGAAGTTTTCGTTTAATTCAGCAGACTTAAGCAGACATGTTTCTGCACGATATAATTTAGAAATAGCTAATAACATGTCTGACGAGGAAGGTGAGCAAATTGAAAGTAAAAAATGTGAAAAGGTTAGTGGATGGCATTCAGACAATGAATTACACTCTAAGAGCTTTCCTCCACGTGTGATCAAACGAGGTGGAGAGTCAGATAGATTAGTTGTTGACAAGAAGAATAATCTAGAATTGAGGTCTGGGACCAGCCATGGAGGACTTTCACAAATTTCAAATCATATGGAAGATCCAGAAGGGATGCCACCAGAGTGGACTCCACCTAATGTCAGCGTACCTCTTCTAAATCTGGTTGACAAGATATTTCAGCTTAATAGGAGAGGCTGGATAAGGAGGCAGGTCCTTTGGATATCAAAACAAATATTACAGTTAATTATGGAAGATGCCATTGATGACTGGATTGTCAGGCAAATACACTGGCTACGGAGAGAGGATATTATTGCTCAGGGTATTCGATGGGTCCAAGATGTTCTGTGGCCCAATGGAATATTCTTCATACAGTTACGGAATGCTCAAATTGAAGATGATTCTCAATCAACTACCAGCCGAACTGATGGAGGCAAAAGCCCAAAGCCTGGATCTTTTGAGCTGCAGCTTGAGGCTGCTCGCAGAGCTAGCGACGTCAAGAAAATGCTTTTTGGTGGGGCTCCAACACCATTGGTAAGCTTGATAGGGCATAACCAATACAAAAGATGTGCAAAAGATATCTACTACTTCACTCAGTCTACCATCTGTGTGAAGCAACTTGGGTATGGATTACTCGAACTATTGCTCATATCACTTTTCCCCGAGCTACGCAATTTAATTCTGGAGATTCATGATAAGTCGCACATCTCACAACCAGTTTAG 3129 41.42 MKAMATLQDLIEEAKLRTVWWALCIFAISYFLTHTSKSMWMNVPLAILLVSALRILFNEVEFHRKVRPIHQQTYLSHLEKKQLSVNDSRLSSALPPPRWKRKIDSPAVEAAMKDFIDKILKDFVVDLWYSEITPDKEFPEQIHALIMDALGEIAVRVKEINLVDLLTRDVVDLVGDHLDLFRRNQAAIGVDVMGTLSSEERDERLKHHLMASKELHPALVSPESEYKVLQRLMSGLLTSVLRPRETQCPVVRSIARELLTCLVVQPLMNFASPGCINELIECIVLATRAENDSVIGGQQQTYSSDLDKDRSSTAGFVHDEDMNKRNSSLNPGSGSELTKFNNKKEISSDYMFQDEPLQMRHGDWGRALNAATQRRTEVLMPENLENMWTKGRNYKKKENKIIKVGASEPMASTKNYGSSIMQPATKTTARDEMLTGKHHSSTGPEEKAIVRRTPARHSDLLLTSKPGDKSKIAFQSSLELQKDSSIDGKFIANELKDVDNLTPTPASANKIQLKRSNSTSALKTEVSVEKHSTEGGRSIISDFYGPNFGKHVEEPLSKSTSDMVSQKEGLLVPKLRSRVMGAYFEKLGSKSFAVYSIAVTDANNRTWFVKRRYRNFERLHRHLKDIPNYTLHLPPKRIFSSSTEDAFVHQRCIQLDKYLQELLSIANVAEQHEVWDFLSVSSKNYSFGKSSSVMRTLAVNVDDAMDDIVRQFKGVSDGLMRKVVGSTSPDEACASSNYDRKFSFNSADLSRHVSARYNLEIANNMSDEEGEQIESKKCEKVSGWHSDNELHSKSFPPRVIKRGGESDRLVVDKKNNLELRSGTSHGGLSQISNHMEDPEGMPPEWTPPNVSVPLLNLVDKIFQLNRRGWIRRQVLWISKQILQLIMEDAIDDWIVRQIHWLRREDIIAQGIRWVQDVLWPNGIFFIQLRNAQIEDDSQSTTSRTDGGKSPKPGSFELQLEAARRASDVKKMLFGGAPTPLVSLIGHNQYKRCAKDIYYFTQSTICVKQLGYGLLELLLISLFPELRNLILEIHDKSHISQPV 1042
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 149854 160662 - MELO3C018420.2.1 Cme01g00015 316991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00015 1042 Pfam Sorting nexin C terminal 869 1003 IPR013937 -
Cme01g00015 1042 SUPERFAMILY PX domain 579 684 IPR036871 GO:0035091
Cme01g00015 1042 ProSiteProfiles PXA domain profile. 105 288 IPR003114 -
Cme01g00015 1042 MobiDBLite consensus disorder prediction 311 325 - -
Cme01g00015 1042 ProSiteProfiles PX domain profile. 573 685 IPR001683 GO:0035091
Cme01g00015 1042 MobiDBLite consensus disorder prediction 300 337 - -
Cme01g00015 1042 CDD PX_SNX19_like_plant 575 679 - -
Cme01g00015 1042 SMART PXA_3 105 288 IPR003114 -
Cme01g00015 1042 Gene3D - 576 690 IPR036871 GO:0035091
Cme01g00015 1042 MobiDBLite consensus disorder prediction 821 841 - -
Cme01g00015 1042 PANTHER PX SERINE/THREONINE KINASE PXK 5 1041 - -
Cme01g00015 1042 Pfam PXA domain 105 281 IPR003114 -
Cme01g00015 1042 PANTHER SORTING NEXIN CARBOXY-TERMINAL PROTEIN 5 1041 - -
Cme01g00015 1042 Pfam PX domain 604 680 IPR001683 GO:0035091
Cme01g00015 1042 SMART PX_2 573 681 IPR001683 GO:0035091
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00015 K17925 SNX13; sorting nexin-13 - csv:101222929 1978.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00015 Cme-Chr1:149854 Cme01g02693 Cme-Chr1:34306112 1.31E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g500 . . . . . Bpe12g00069 . . Cmo19g00647 Cmo11g01333 . . . . . Cpe04g00257 Cpe15g00511 Bhi05g01163 . . . Hepe02g0556 . . Cla02g00568 Cam02g0598 Cec02g0598 Cco02g0609 Clacu02g0594 Cmu02g0592 Cre02g0921 Cone12ag1120 Cone8ag1165 . . . Csa07g00810 . Cme01g00015 . . Bda15g00024 . . . . . . . . Cma11g01777 Cma19g00630 Car11g01074 Car19g00481 . . . . . . . . . . . . . . . . Lsi11g01041 . Chy01g00019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009346 0 3 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00015 Cme_Chr01 FPKM 8.986292 8.098094 2.297273 2.028111 1.300995 0.932948 1.527063 1.768491 2.251167 2.433834