Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00017 ATGGAAGACACCTTGGTCGTGGATTCTACCTTCATCCAACCCATCCACCACCGCCCCAAGCTCCCACCATTCCAACTCACTGATCAAGTCCCAACCATAGATCTCTCTATCTCCCTCTCTCGCACCACCCAACACCTTGTCTCCGAAATAGCCTCTGCCTGCCAGAACTGGGGTTTCTTCCAGGTAATCAATCATGGAGTTTCCCTCGAGAAGCTCGCGCGAATCCAGAAAGCTGCCAAGTTATTTTTCGACCAGACGGTGGAGGAGAAAAGGAAGGTGAAGAGAGATTCAGGTAATGCTGTGGGATTTTATGACGGTGAGAACACGAAAAACGTTAGGGATTGGAAGGAGGTCTTTGATTTCTTGGTTAAGGATGGGACGTTCTTTCCAGCTTCGCATGATCCAAATGATACGAAATTGAGGGTATTGTTTAATCAGTGGCCGGAATATCCCCCTGGATTTAGGGAAACGTGCGAGGAGTATGCCAGAGAGTTGGAATTGCTAGCACATAAGCTACTGAGGTTGATTCTTTTGAGTCTAGGCTTATCTGATGCTGATGCATTGAAGGGCTATTTCAATGACGAGCAAACGAGCTTGGTGAGGTTGAATCGGTACCCTCCATGTCCGTCTCCTGATCTTGTGCTCGGCGTAGGCCGTCACAAAGATTCTGGTGCCTTGACAATCCTTGCTCAAGATGCTGTTGGAGGGCTGCAAGTGAGGAGAAAATCAGATGGAGAGTGGATTCCTGTCAAACCAATCCCAAATGCTTATATTATTAACATTGGCGACGTTGTTCAAGTTTGGAGCAATGACAAATATGAAAGTGTGGAGCACAGGGTGGTGGTGAATACTGAGAAAGAAAGGTTTTCATTTGCATTCTTCTTCTTTCCAGCTCACCATATGATGGTGAAGCCATTGGAGGAGCTTGTGGATGAGCAAAACCCACCAAAATACAGAGAATACAACTTCGGGAAGTATTTTGCTTCCAGAAGCCGAGGTAACCAGAAACAAGAAGTGGAAAACATCCAAATTGACCATTTTAGGCTGCCCGTATGA 1056 46.4 MEDTLVVDSTFIQPIHHRPKLPPFQLTDQVPTIDLSISLSRTTQHLVSEIASACQNWGFFQVINHGVSLEKLARIQKAAKLFFDQTVEEKRKVKRDSGNAVGFYDGENTKNVRDWKEVFDFLVKDGTFFPASHDPNDTKLRVLFNQWPEYPPGFRETCEEYARELELLAHKLLRLILLSLGLSDADALKGYFNDEQTSLVRLNRYPPCPSPDLVLGVGRHKDSGALTILAQDAVGGLQVRRKSDGEWIPVKPIPNAYIINIGDVVQVWSNDKYESVEHRVVVNTEKERFSFAFFFFPAHHMMVKPLEELVDEQNPPKYREYNFGKYFASRSRGNQKQEVENIQIDHFRLPV 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 167745 169946 + MELO3C018422.2.1 Cme01g00017 316993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00017 351 PRINTS Isopenicillin N synthase signature 50 67 - -
Cme01g00017 351 PRINTS Isopenicillin N synthase signature 220 241 - -
Cme01g00017 351 PRINTS Isopenicillin N synthase signature 285 303 - -
Cme01g00017 351 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 196 297 IPR005123 -
Cme01g00017 351 PANTHER DIRIGENT PROTEIN 6 342 - -
Cme01g00017 351 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 6 342 - -
Cme01g00017 351 Pfam non-haem dioxygenase in morphine synthesis N-terminal 30 149 IPR026992 -
Cme01g00017 351 SUPERFAMILY Clavaminate synthase-like 8 332 - -
Cme01g00017 351 Gene3D - 2 338 IPR027443 -
Cme01g00017 351 Pfam 2OG-Fe(II) oxygenase superfamily 198 297 IPR044861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00017 - - - csv:101209915 612.453
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00017 Cme-Chr1:167745 Cme01g00020 Cme-Chr1:178121 7.35E-145 dispersed
Cme01g00017 Cme-Chr1:167745 Cme01g00019 Cme-Chr1:173497 6.21E-61 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g494 . . . . . . . . . Cmo11g01335 . . . . . Cpe04g00259 . . . . . . . . Cla02g00570 Cam02g0600 Cec02g0600 Cco02g0611 Clacu02g0596 Cmu02g0594 . . . . . . . . Cme01g00017 . . . . Bpe15g00885 . . . . . . . . Car11g01076 . . . . . . . . . . . . . . . . . Lsi11g01040 . Chy01g00022 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00017 Cme_Chr01 FPKM 8.954576 10.418907 9.263971 9.989549 9.794428 9.734486 10.509236 15.688528 14.554062 16.728416