Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00020 ATGGGAGATCTTGAGGACTTTGATCACGCTTTCATCCAAGCCCCCGAGCACCGCCCCAAACTCGCACTCTCCGATGCTGATGGAATCCCCACCATCGACCTCTCTCCAATCTTTAACTCAGTACCCGGCACTGATTTCCCCCACCATTTGGTCCAGCAAATCGCCTCTGCTTGCACGGAGTGGGGATTCTTTCTGGTCGTCAACCACGGTGTCCCTCCCGAGAAGCGGCGTCGAATAGAAGCCGCTGCCCGGGAGTTTTTTGGACAGAGTTTGGAGGAGAAGAGGAAAGTGAGGAGAAATGAATGGGTGGTGACCGGCTATTTTGATACGGAGCTGACCAAGAATGTCAGAGATTGGAAGGAGGTCTTTGATTTCGTGGTGGAGGATCCGACCGTCATTCCCGCATCGTCGGATCCTGATGACACTGAGTTGACTCAGTTGGTCAATCAGTGGCCGGAATACCCACCGGAATTCGGAGAGATTTGCGAAGGATATGTTGAAGAATTGGAGAAACTTGGGCACAAATTGATGGAACTAATCGCCAATAGCTTGGGATTACCGGGTAAAAGGTTTAGAGATTATTTTAAAGGGCAAACAAGTTCTGTGAGACTCAATCACTATCCATTGTGCCCATCACCGGAGCTAGCTCTCGGAGTTGGTCGCCACAAGGACCCCGGTGTCTTGACGGTGCTCGCCCAAGACGACATTGGAGGACTGGAAGTGAGAAGGAAGAGAGATGGAGCGTGGATTCAAGTCAAACCCGTACCTGATTCTTTTGTGGTCAATGTTGGAGATATTACTCAGGTTTGGAGCAATGAGAAGTATGAGAGTGTGGAGCATAGGGCTACGGTAAACAGCAAGAGGGATAGATATTCCATTGCTTTCTTCTTTTACCCATCTCATTCCACCATCGTTGAGCCTTTGGAAGAGCTTATTGGTCCCCAAAACCCTCCCAAATACAAACCATACTCTTTTGGGAAGTTCCTCGCCAGTAGAAAACGCAGCAATTTCAAGAAACTTAATGTCGACAACATTCAAATCTCTGATTTCAAGATCACCACATAA 1065 48.54 MGDLEDFDHAFIQAPEHRPKLALSDADGIPTIDLSPIFNSVPGTDFPHHLVQQIASACTEWGFFLVVNHGVPPEKRRRIEAAAREFFGQSLEEKRKVRRNEWVVTGYFDTELTKNVRDWKEVFDFVVEDPTVIPASSDPDDTELTQLVNQWPEYPPEFGEICEGYVEELEKLGHKLMELIANSLGLPGKRFRDYFKGQTSSVRLNHYPLCPSPELALGVGRHKDPGVLTVLAQDDIGGLEVRRKRDGAWIQVKPVPDSFVVNVGDITQVWSNEKYESVEHRATVNSKRDRYSIAFFFYPSHSTIVEPLEELIGPQNPPKYKPYSFGKFLASRKRSNFKKLNVDNIQISDFKITT 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 178121 179996 + MELO3C028576.2.1 Cme01g00020 316996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00020 354 Pfam non-haem dioxygenase in morphine synthesis N-terminal 29 153 IPR026992 -
Cme01g00020 354 Pfam 2OG-Fe(II) oxygenase superfamily 200 297 IPR044861 -
Cme01g00020 354 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 6 344 - -
Cme01g00020 354 Gene3D - 2 339 IPR027443 -
Cme01g00020 354 PRINTS Isopenicillin N synthase signature 54 71 - -
Cme01g00020 354 PRINTS Isopenicillin N synthase signature 222 243 - -
Cme01g00020 354 PRINTS Isopenicillin N synthase signature 287 305 - -
Cme01g00020 354 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 198 299 IPR005123 -
Cme01g00020 354 PANTHER DIRIGENT PROTEIN 6 344 - -
Cme01g00020 354 SUPERFAMILY Clavaminate synthase-like 5 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00020 - - - csv:116401616 648.277
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00017 Cme-Chr1:167745 Cme01g00020 Cme-Chr1:178121 7.35E-145 dispersed
Cme01g00020 Cme-Chr1:178121 Cme06g00717 Cme-Chr6:4710863 7.64E-57 dispersed
Cme11g00693 Cme-Chr11:8192832 Cme01g00020 Cme-Chr1:178121 2.06E-38 dispersed
Cme11g02160 Cme-Chr11:28997126 Cme01g00020 Cme-Chr1:178121 3.38E-33 dispersed
Cme01g00019 Cme-Chr1:173497 Cme01g00020 Cme-Chr1:178121 1.53E-111 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g485 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g00020 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00025 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00020 Cme_Chr01 FPKM 6.884851 8.838508 15.106239 16.299009 48.909142 45.078674 48.288445 19.105833 18.821457 18.818575