Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00021 ATGGAGAAGAAGATCAAGAACAACAACTACCTGTTACCACTACTTCTCCTGTCCCTCTTCTTCCAATTCCCACTCTCCGATAATACTTCTCACCCTCATCATTTTCACAAACACTTCGTCTTCATCCACGGATCCTGCCATGGTGCATGGTCCTGGTTCAAACTCCTTCCTCTCCTCCAATCCTCCGGCCACCGCGTCACCGCCCTCGACTTGGCCGCCTCCGGAATCGACCATCGGAATCCGGACTCTATCCGATCCATTTCCCAGTACTTCCAGCCTCTGACTGACTTCATGTCAGCTCTCCCTCAGCACCAAAAGGTGATCCTCGTGGGGCATAGCCTGGGAGGATTGGCCGTGGCGAAAGCCATGGAGGAGTTCCCGACGAGGATTTCCGCCGCCGTTTTCGTCACCGCTACGATGCCTGGGCCAGCTCTGAACATATCGACCATTTATGGGAAGGTATTCGAGAGGAATGAATCAATGATGGACAGCGTTTACTCCTACGGAGATGGCACGAATCGGCCTCCCACTGCTTTCCTCTTTGGGCCGCGCTTTTTGGCTTCCAAAGTTTATCAGCGCAGCCCACCTGAGGATTTAACATTGGCGACATTGCTAATGAGGCCAGTCCCATTATTCACTGAAAAAGACATGTCCGACGTATTGAAGCTGTCGGAGAGAAATTACGGTTCCGTTAAACGAGTATTCGTCATGTCGGGAATGGATTTGGTTAGTAATAAAGAATTTCAACGATGGATGATTGAGAACAACTCACCTGATCGTGTGGTGGAGATGGAAGGATCAGATCATATGGTGATGATGTCTAAGCCTTTCCAATTGTGTGCTCATCTTCAACTCCTTGCTCAATACTATCCTTAA 876 49.54 MEKKIKNNNYLLPLLLLSLFFQFPLSDNTSHPHHFHKHFVFIHGSCHGAWSWFKLLPLLQSSGHRVTALDLAASGIDHRNPDSIRSISQYFQPLTDFMSALPQHQKVILVGHSLGGLAVAKAMEEFPTRISAAVFVTATMPGPALNISTIYGKVFERNESMMDSVYSYGDGTNRPPTAFLFGPRFLASKVYQRSPPEDLTLATLLMRPVPLFTEKDMSDVLKLSERNYGSVKRVFVMSGMDLVSNKEFQRWMIENNSPDRVVEMEGSDHMVMMSKPFQLCAHLQLLAQYYP 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 180323 181663 + MELO3C018425.2.1 Cme01g00021 316997

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00021 291 Pfam Alpha/beta hydrolase family 39 281 IPR000073 -
Cme01g00021 291 Gene3D alpha/beta hydrolase 35 290 IPR029058 -
Cme01g00021 291 SUPERFAMILY alpha/beta-Hydrolases 37 283 IPR029058 -
Cme01g00021 291 PANTHER ESTERASE PIR7A-RELATED 28 288 - -
Cme01g00021 291 PANTHER METHYLESTERASE FAMILY MEMBER 28 288 IPR045889 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00021 - - - csv:101221751 500.745
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00021 Cme-Chr1:180323 Cme11g00501 Cme-Chr11:4988488 2.11E-95 dispersed
Cme01g00018 Cme-Chr1:170997 Cme01g00021 Cme-Chr1:180323 2.40E-76 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g484 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g00573 Cam02g0604 Cec02g0604 Cco02g0617 Clacu02g0599 Cmu02g0597 Cre02g0927 . Cone8ag1161 . . . Csa07g00793 Chy11g00429 Cme01g00021 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00026 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000481 0 4 0 1 0 6 3 6 4 3 4 4 3 4 5 4 4 6 3 5 4 5 3 3 7 4 5 3 4 5 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00021 Cme_Chr01 FPKM 6.581404 9.766204 8.236959 9.28373 9.859196 8.187785 9.878215 4.854535 5.039883 5.872876