Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00033 ATGCCGTCGAAGGGAAAGAAGAACGCAAAGACACTCTCTAGATTGTCTAACTCAAACCACTCTCAATCTCCTGTGTCACGGTTCACAATACCTCCTGTCTCTCAAGTTTCTGAAGATGAGTTTCTTTCCTCCATTGAAGAAGCTTCAAGTAAATATCCTTTTTTTATTAGCAAATCTGCTTTTGTTGGAAGACTTGTTAAGGATCCAGTTCAATCTACTGGCTGTAAAGTTTGGCTTTCTGAACCTTCTATGCTTGCTTCTAGCTTCACCCAAGGGGCTATTGTCTCGGTAGCACTTAGTTCCGAGGGAGGTAACTTTCCTCTGTCCTCACTAGCAGATGAATGTGGTATGCACTTTGGGGTTGATTATGGAGATTCAATAATCCATGAAGCGGGAAATTACTTTGCTCTTGCGAGAATTTTCTCCTGTGGTAAGGAGTTAAATGATGGAGTGCAATTATCAACGAACCTTTCATTTACCTTGGGTTGCCCTACAATTGGCCGTGTTGTGTTTATCTCTCCTTTGAAAACCCATCTTTGCAATGATCCAGTAAATGATAATGGTAAATTGAAGAGCACAGAAGTTGACTTTTTGAGAATATACAATTGTAAGGAACTGTTTCTGGATCTAGCGTCATCAACCAATGTATCAACAAAAGACAACTTATTCTCATCCTCAACTATTTATTCAAGAAAGGTTCAAGGTCGTAGTGAAAATGGTAATTTAACATCCCCAAGCACCATGCTGTCTGCTTCTCCTAAATTTGATGAGGTGGTATCAAACTTACCAAGTCCATTTGCTCATTCACTTATTAAGGAGTCCTTAGGAGATGATACCGTCAGAAAAACTCTACAGACAATTGCCTCCAATGAGTTGTATAAACGTTGTGTGCTACGTGGTAACCTTGTAACTATCCCAGTGCTTTCAGATCTTTGTACATTTCATGTAAAGGGTGCGAAAGGACTGTCAGGATATGATGACTCTTATGATTCTGTGCACAGTGGAAGCAACAATCATTTTCAACATTTTTCATCAGATGAATATGCGAATTGTGCTTTTAGTATAAACCAGTTGACAAAAGTATTTATAAATGTCCAATCAACCATGGTCTCAGAGACAATTCAAGAAACTTTTCCATCAAATGTGGAACCTCAAAGTCTAAGTATCAGAGCTAAAGTAAAGCCTAAAGTTTGGAAATTGGGTGGTCTTTCAAAAGAATATTCAGTTTTGAAGGATATTATAATTGCTTCATCATTAAATAGCACCGTGTCAAGCCTTGGTTTTCGAACCACAAAGGGAGTACTTCTTCATGGTCCTCCTGGTACCGGAAAAACTTCCTTGGCTCAATTATCTGCTCATGATGCTGGTGTCAACCTGTTCTATTTGAATGGACCTGAAATTATAAGTCAATATCATGGGGAAAGTGAACAGGCGCTGCATGATGTTTTTGAGGAGGCAAGCCAAGCTGCACCTGCTGTGATATTAATTGATGAGTTGGATGCTATTGCACCTGCAAGAAAAGATGGAGGTGAAGAGCTGTCTCAAAGAATTGTAGCTACACTGCTTAATCTAATGGATGGGATCAAGCGAAGTGGTGGGCCACTTGTAATTGCTTCTACCAACAGACCTGAAAGCATTGAGCCTGCACTAAGGCGGCCTGGGAGACTTGACCGGGAAATTGAAATAGGCGTGCCATCTCCCAACCAACGGTTGGATATTCTACATACAATACTTAGTGAAATGGAGCACTCTCTTTCAGTCGTGCAAGTTCAACATCTAGCTATGGTCACACATGGTTTTGTGGGTGCTGATTTGGCTGCCCTTTGCAATGAGGCTGCCTTAGTTTGTATAAGGCGTTATCAAAAGTTTAAAGTTTCTTCTTCTAATTGCCATAGTTTTGGTAGATCTGTTATAGCAGAGGAACAGCACAAGTTTAATGAGGTGGCTCACAAAGCCAATGACGATCATATGATATTGGAACCTGATATCTTACAAGATGAAGGAAGTATATCCGGGGTTTGCCAAAAGCTTGCATCTTCATCTATCTCTGAACATACTTTTACATCTGACCCAGTAACATGTGTGTCCTTGAATGAAGTGATTGCTGATAGCGAGGATAGTTTTAACTCTTCTGAAATCAAGTGTAAATTGAAGGTTGTTTTTGAAGACTTTGAGATAGCTAGAATGAAAGTGAGGCCTAGTGCCATGCGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAAATGGAGGTTAAGGCTCAATTAATGGAAACAGTGGAATGGCCTCAAAAACATCAGGATGCATTCAAACGAATAGGGACACGACCTCCAGCAGGAGTGTTATTGTTTGGTCCTCCTGGATGTAGCAAAACCCTCATGGCACGTGCTGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTGAAGGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCAGTTAGATCTCTGTTTGCTAAGGCAAGAGCTAATGCCCCATCAATCGTGTTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGGGTTTCTGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAATTGGATGGCTTACATCAGAGAGTTGGTGTCACTGTCATTGCAGCTACCAATCGGCCAGATAAGATTGATCCAGCCCTTCTAAGGCCAGGACGTTTTGATCGGCTACTTTATGTTGGGCCCCCAAATGAATCTGAGCGAGAAGAGATATTTCGTATCCATTTGTGCAAAGTTCCTTGCAGCCCAGATGTCAGCACGAGGAAGTTGGCTTCTCTTACTCAAGGGTGTACCGGGGCTGACATATCATTAATTTGCAGAGAATCAGCTTTACTTGCCCTTGAGGAGAACCTTGAGGCGTCAATAATAAGTATGCAACATTTAGAGACTGCAGCTAGACACGTGAAGCCATCTGAAACTGAACCTTACCGAGAATTATCATCCAGGTTTCAAAGGCTTGTTTGTTCTAGCTCACAAGAAGTTAATGTTGTGTGTCAGCAGTCACGATCTAACTGGTTTTCTTTTTGGCCCCTTGTAAAATCAGCTGTGCTACTCTTTTCTCGTGTTCGTCACATGCTTGAAGGCTTGAAATGA 3162 41.33 MPSKGKKNAKTLSRLSNSNHSQSPVSRFTIPPVSQVSEDEFLSSIEEASSKYPFFISKSAFVGRLVKDPVQSTGCKVWLSEPSMLASSFTQGAIVSVALSSEGGNFPLSSLADECGMHFGVDYGDSIIHEAGNYFALARIFSCGKELNDGVQLSTNLSFTLGCPTIGRVVFISPLKTHLCNDPVNDNGKLKSTEVDFLRIYNCKELFLDLASSTNVSTKDNLFSSSTIYSRKVQGRSENGNLTSPSTMLSASPKFDEVVSNLPSPFAHSLIKESLGDDTVRKTLQTIASNELYKRCVLRGNLVTIPVLSDLCTFHVKGAKGLSGYDDSYDSVHSGSNNHFQHFSSDEYANCAFSINQLTKVFINVQSTMVSETIQETFPSNVEPQSLSIRAKVKPKVWKLGGLSKEYSVLKDIIIASSLNSTVSSLGFRTTKGVLLHGPPGTGKTSLAQLSAHDAGVNLFYLNGPEIISQYHGESEQALHDVFEEASQAAPAVILIDELDAIAPARKDGGEELSQRIVATLLNLMDGIKRSGGPLVIASTNRPESIEPALRRPGRLDREIEIGVPSPNQRLDILHTILSEMEHSLSVVQVQHLAMVTHGFVGADLAALCNEAALVCIRRYQKFKVSSSNCHSFGRSVIAEEQHKFNEVAHKANDDHMILEPDILQDEGSISGVCQKLASSSISEHTFTSDPVTCVSLNEVIADSEDSFNSSEIKCKLKVVFEDFEIARMKVRPSAMREVILEVPKVKWEDIGGQMEVKAQLMETVEWPQKHQDAFKRIGTRPPAGVLLFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESEREEIFRIHLCKVPCSPDVSTRKLASLTQGCTGADISLICRESALLALEENLEASIISMQHLETAARHVKPSETEPYRELSSRFQRLVCSSSQEVNVVCQQSRSNWFSFWPLVKSAVLLFSRVRHMLEGLK 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 259223 269166 + MELO3C018435.2.1 Cme01g00033 317009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00033 1053 Gene3D - 382 563 IPR027417 -
Cme01g00033 1053 Pfam AAA+ lid domain 588 627 IPR041569 -
Cme01g00033 1053 Pfam AAA+ lid domain 940 985 IPR041569 -
Cme01g00033 1053 Gene3D - 743 990 IPR027417 -
Cme01g00033 1053 CDD AAA 432 563 - -
Cme01g00033 1053 Gene3D - 919 989 - -
Cme01g00033 1053 PANTHER AAA-FAMILY ATPASE 71 1016 - -
Cme01g00033 1053 Pfam ATPase family associated with various cellular activities (AAA) 434 563 IPR003959 GO:0005524|GO:0016887
Cme01g00033 1053 Pfam ATPase family associated with various cellular activities (AAA) 786 917 IPR003959 GO:0005524|GO:0016887
Cme01g00033 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 619 IPR027417 -
Cme01g00033 1053 ProSitePatterns AAA-protein family signature. 888 906 IPR003960 GO:0005524|GO:0016887
Cme01g00033 1053 SMART AAA_5 430 566 IPR003593 -
Cme01g00033 1053 SMART AAA_5 782 920 IPR003593 -
Cme01g00033 1053 PANTHER - 71 1016 - -
Cme01g00033 1053 MobiDBLite consensus disorder prediction 9 29 - -
Cme01g00033 1053 Gene3D - 564 701 - -
Cme01g00033 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 993 IPR027417 -
Cme01g00033 1053 CDD AAA 752 918 - -
Cme01g00033 1053 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00033 Cme-Chr1:259223 Cme04g02520 Cme-Chr4:31499812 5.94E-36 dispersed
Cme12g01661 Cme-Chr12:23645819 Cme01g00033 Cme-Chr1:259223 4.86E-12 dispersed
Cme01g00033 Cme-Chr1:259223 Cme08g01290 Cme-Chr8:9330978 5.28E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00033 - - csv:101220574 1966.04