Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00041 ATGGTGGAATCGAACCTGACTTATGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAGCTTAATCTGAACAAGCTTGCTGATGCTTTCAAATCTTCCAGTCCTAAATCCTCTCCGACGAAACAGCTAAAGCGTCCTCGTCAGCCATTCGATGTCTCGTCCTTCTCTGTGAGAAGGTCTAGCCGTTTTGCCGATAAGCCCCCTATGAACTATAAGGAGGTGCCCATTGAACCACTTCCAGGTATTAGAAGAAGTTATCAAAGGAGAGATTTGTTGAATCGGATTTATGCTTCAGATGAAGAAAGGCAATATGCTATTGACAGAGCACTAGACCTTCAATCAAGCCTGGAATCTAAGTACCCCAGTTTTGTGAAGCCAATGCTTCAATCACATGTTTCAGGAGGATTTTGGCTGGGTCTTCCAGTTAGATTTTGCAAGACACATCTTCCCCATGAGGATGAAATTCTAACTTTGGTGGACGAGGATGAAAATGAGTTCCAAACGAAGTACCTTGCCGACAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTTCTATTGATCACCAGTTAGTAGATGGGGATGCTTTGGTGTTTCAGTTAACTAGCCCAACTGAATTCAAGGTATATATCATCAGGACATATAATTCAGTAGACAAAGAAGATACCAAAGAGGGTTCTGACGCCACCCAATTGGAAAGCAGTGGCAAAAAGAACACCAAATCATCAGGGCACAAAACCAGGGCAAATAATTCCGAGGATAAAGGAGATATCGATGAGGATTCAGATGTGTTTCAGTTGGAAAAAGGTGGTAAAAAGACTACTAGATCATCAAGGTGTAAAAGGAGCGCAAATAAATCTGAAGATAAATCAGATACCGGCACGGATTCCCACGACCCCCAGTTGGGAAAAACTGGCAAAAGAATTACTAGATCATCAAGGAAAAAGTAA 963 42.78 MVESNLTYEECRRQRLEENKKRMEELNLNKLADAFKSSSPKSSPTKQLKRPRQPFDVSSFSVRRSSRFADKPPMNYKEVPIEPLPGIRRSYQRRDLLNRIYASDEERQYAIDRALDLQSSLESKYPSFVKPMLQSHVSGGFWLGLPVRFCKTHLPHEDEILTLVDEDENEFQTKYLADKTGLSGGWRGFSIDHQLVDGDALVFQLTSPTEFKVYIIRTYNSVDKEDTKEGSDATQLESSGKKNTKSSGHKTRANNSEDKGDIDEDSDVFQLEKGGKKTTRSSRCKRSANKSEDKSDTGTDSHDPQLGKTGKRITRSSRKK 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 339525 342208 + MELO3C018443.2.1 Cme01g00041 317017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00041 320 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS06G0194400 2 232 - -
Cme01g00041 320 SMART B3_2 128 219 IPR003340 GO:0003677
Cme01g00041 320 ProSiteProfiles B3 DNA-binding domain profile. 128 219 IPR003340 GO:0003677
Cme01g00041 320 MobiDBLite consensus disorder prediction 32 60 - -
Cme01g00041 320 MobiDBLite consensus disorder prediction 224 320 - -
Cme01g00041 320 Pfam B3 DNA binding domain 128 217 IPR003340 GO:0003677
Cme01g00041 320 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 232 IPR044837 -
Cme01g00041 320 MobiDBLite consensus disorder prediction 31 60 - -
Cme01g00041 320 SUPERFAMILY DNA-binding pseudobarrel domain 121 217 IPR015300 -
Cme01g00041 320 Gene3D - 104 220 IPR015300 -
Cme01g00041 320 Coils Coil 6 33 - -
Cme01g00041 320 MobiDBLite consensus disorder prediction 285 309 - -
Cme01g00041 320 CDD B3_DNA 126 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00041 Cme-Chr1:339525 Cme03g02021 Cme-Chr3:27851668 1.11E-79 dispersed
Cme01g00041 Cme-Chr1:339525 Cme06g01310 Cme-Chr6:10939134 8.42E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40680 PF02362 B3 4.60E-15 CL0405 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00041 - - csv:101206354 582.793