Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00047 ATGGAAGCTCTCTCTGTTCCTCTTTACATAACAATATTATTCCTTTTTCTTTTCACTTTCTTTTCCATTTCATTTCTTAAAAGATCAAGAAATGAAAACTCTAAATCCCAAAATTCTCTTAAGCTTCCTCCTGGTTCCATGGGATTACCTTGGATTGGTGAAACTTTGCAACTCTATTCTCAAGATCCCAATATCTTTTTCTCACAGAAACAGAGAAGATATGGTGAAATTTTTAAGACCAATATTTTGGGATGTCCTTGTGTCATGTTGGCAAGCGCAGCCGCAGCACGGTTTGTTTTGGTGACAAACGCCCATTTATTCCGACCGACTTACCCGAAAAGTAAAGAGACGATGATCGGACCGGCGGCGCTTTTCTTTCACCAAGGAAATTACCATTCTAACCTCAGGAAGCTTGTTCTTAACTCTCTGTCTCTTGAACGTCTCAGAACTCTTGTTCCTTCTATAGAAGCCGCCGCCATTTCCGCCACCGATTCTTGGGCCGCCGCCGGCCACGTCATCAACACCTTCCGTGAAATGAAAAAGTATTCATTCGAGGTGGGAATTATAGCAGTGTTTGGAAAGCTAGAAAATGAGTACAAAGAGAAGCTAAAACAAAAGTATTGCATATTAGACAAAGGCTACAATTGTTTTCCCACCAGATTACCAGGAACAGGATATTCAAAAGCATTATCAGCAAGGAAGAAGCTTAGGGAGATTCTGGGAGAGATAATAATGGAAAGAAGAGAAAAAAGAGTAACAGAGAGAGATTTCGTTGGTCATCTTTTGAACTATAGAGATGAAAATGGTGAAAGTTTAAGTGAAGATCAAATCGCTGACAATATCATCGGAGTTCTATTCGCCGCCCAAGACACCACCGCCACTGTCCTCACTTGGATCCTTAAATATCTTCACGACAACTTCAAACTTTTCGAGGCTGTTAAGGCAGAGCAGATGGAAATTTATAGAAGAAATGGAGAAGGAAAGATGCCTCTGTCTTGGGGTCAGATTAAGGACATGCCCTTCACTCATAGGGTTGTATTAGAGAGCTTGAGGATGGCTAGCATCATATCCTTCACTTTTAGGGAGGCAGTGGTTGATGTAGAATATAAAGGGTACCTTATCCCAAAGGGTTGGAAGGTGATGCCTTTATTCAGGAATATTCATCACAACCACGAGTACTTCCCTGACCCTCATATATTTGATCCCTCTAGATTTGAGGTGGCTCCAAGGCCCAATACATTCATGCCATTTGGCAATGGAGTACATTCTTGCCCTGGAAATGAACTTGCCAAGCTGGAGATCCTCATATTGCTTCATCACCTCATTACCAAATTTAGGTGGGAAGTAGAGGGATCACAAAGTGGGGTTGAATATGGGCCATTCCCGATGCCTCTCCAAGGCCTACCCTCCAGATTTTTCAAACAAACAACCACCAACCAATAG 1443 42.0 MEALSVPLYITILFLFLFTFFSISFLKRSRNENSKSQNSLKLPPGSMGLPWIGETLQLYSQDPNIFFSQKQRRYGEIFKTNILGCPCVMLASAAAARFVLVTNAHLFRPTYPKSKETMIGPAALFFHQGNYHSNLRKLVLNSLSLERLRTLVPSIEAAAISATDSWAAAGHVINTFREMKKYSFEVGIIAVFGKLENEYKEKLKQKYCILDKGYNCFPTRLPGTGYSKALSARKKLREILGEIIMERREKRVTERDFVGHLLNYRDENGESLSEDQIADNIIGVLFAAQDTTATVLTWILKYLHDNFKLFEAVKAEQMEIYRRNGEGKMPLSWGQIKDMPFTHRVVLESLRMASIISFTFREAVVDVEYKGYLIPKGWKVMPLFRNIHHNHEYFPDPHIFDPSRFEVAPRPNTFMPFGNGVHSCPGNELAKLEILILLHHLITKFRWEVEGSQSGVEYGPFPMPLQGLPSRFFKQTTTNQ 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 374836 377730 - MELO3C018449.2.1 Cme01g00047 317023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00047 480 PRINTS P450 superfamily signature 287 304 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g00047 480 PRINTS P450 superfamily signature 344 355 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g00047 480 PRINTS P450 superfamily signature 415 424 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g00047 480 PRINTS P450 superfamily signature 424 435 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g00047 480 SUPERFAMILY Cytochrome P450 38 472 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g00047 480 PANTHER CYTOCHROME P450 26 14 474 - -
Cme01g00047 480 Pfam Cytochrome P450 43 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g00047 480 PRINTS E-class P450 group I signature 71 90 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g00047 480 PRINTS E-class P450 group I signature 276 293 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g00047 480 PRINTS E-class P450 group I signature 343 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g00047 480 PRINTS E-class P450 group I signature 383 407 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g00047 480 PRINTS E-class P450 group I signature 414 424 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g00047 480 PRINTS E-class P450 group I signature 424 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g00047 480 PANTHER CYTOCHROME P450 FAMILY ABA 8'-HYDROXYLASE 14 474 - -
Cme01g00047 480 Gene3D Cytochrome P450 31 474 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme01g00047 480 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 417 426 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00047 Cme-Chr1:374836 Cme07g01477 Cme-Chr7:20551212 0 dispersed
Cme05g00299 Cme-Chr5:2208479 Cme01g00047 Cme-Chr1:374836 3.48E-66 transposed
Cme01g00047 Cme-Chr1:374836 Cme03g02046 Cme-Chr3:27961732 1.19E-156 wgd
Cme01g00047 Cme-Chr1:374836 Cme07g00357 Cme-Chr7:2295995 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00047 K09843 - csv:101219389 919.457