Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00052 ATGCGGCTATGGTGGATTCTTGGGTCGACTTGTTCTATGGATCTCCGATTTTGCGAGAAGGGAATGGAGGTGGTAGTAAAACGGGCACTGGAATTTCTATTAATGATGGAGGGATTGATGGAATTAGCTGTGAGCAGTGGCTGGAGAAGGAGGATGCCGTGGAGTATTCTAGGGACTTCAAAAGGGAACCTGTTTTGGTTTCTGGCTCCGAGAAGGAGTGGAGAACTTGTGATGTGGGATGCCAATTTGGATTTAATCCTGGACAGCAGCCTGATGCTATATTCGGATCACCTAATCAAGGTAGTGTTGCTAGTGTACTTCGATCCATGGAATCATCACATTACTATCCTGAGAACAATATTGATTTGGCAAGACGGTGGGAAGGGTTATACCGTGGTTATGACCACTAGTCTATCATCAGATGTCCCTGTTGGATATTTTTCATGGGCAGAATACGATATAATGGCACCAGTGCAGCCAAAGACCGAGCCTGCCCTTGCAGCTGCCTTCATTTCAAATTGTGGTGCTCGCAACTTCCGTTTGCAAGCTCTTGATGCGCTTGAGAAGTTGAATGTCAAAATTGATTCATATGGTAGCTGCCACCGGAACCGCGATGGAAGAGTTGACAAAGTGGAAACGTTGAAGCGCTACAAGTTCAGCTTGGCATTTGAGAATTCCAATGAAGAAGATTATGTCACGGAAAAGTTTTTTCAATCTCTTGTTGCAGGAACCATTCCGGTGGTGGTTGGTGCTCCAAACATCAAGGAGTTTGCTCCTTCTCCTGATTCATTTTTGCATATCAAGGAGTTTTCTGATGTTGAGTCGATTGCCAAGTCCATGAAATACCTTGCTGAAAATCCCAAAATATACAATCAATCTCTAAGATGGAAGTATGATGGTCCATCCGAGTCTTTCAAGGCCCTTGTCGATATGGCAGCAGTGCACTCATCCTGCCGCCTTTGCATCCATATGGCAACCGTCATCCACGAGAAAGAAGAAAACAGTCCCAGGTTCAAGAAACGACCGTGCAAGTGTTCTCGAGGCTCTGAAACCATGTATCATTTATACATAAGGGAGAGGGGGAGGTTTGAAATGCAATCCATATTTTTGAGGTCAGGAAATTTGACGTTGGAGGCTTTAGAATCAACTGTGCTAAACAAGTTCAATTCTTTGAAACACGTACCGATTTGGAAGGAAGAAAGGCCTGAAAGCGTAAGAGGAGGAGATGAACTAAAACTATACAGAATATATCCTGTTGGATTGACTCAAAGGCAGGCTTTATATACCTTCAGATTCAAAGGCAATGACGATTTCAGAACTCACATAGAAACACACCCTTGTGCAAAGATGGAAGTCATATTTGTCTGA 1368 43.79 MRLWWILGSTCSMDLRFCEKGMEVVVKRALEFLLMMEGLMELAVSSGWRRRMPWSILGTSKGNLFWFLAPRRSGELVMWDANLDLILDSSLMLYSDHLIKVVLLVYFDPWNHHITILRTILIWQDGGKGYTVVMTTSLSSDVPVGYFSWAEYDIMAPVQPKTEPALAAAFISNCGARNFRLQALDALEKLNVKIDSYGSCHRNRDGRVDKVETLKRYKFSLAFENSNEEDYVTEKFFQSLVAGTIPVVVGAPNIKEFAPSPDSFLHIKEFSDVESIAKSMKYLAENPKIYNQSLRWKYDGPSESFKALVDMAAVHSSCRLCIHMATVIHEKEENSPRFKKRPCKCSRGSETMYHLYIRERGRFEMQSIFLRSGNLTLEALESTVLNKFNSLKHVPIWKEERPESVRGGDELKLYRIYPVGLTQRQALYTFRFKGNDDFRTHIETHPCAKMEVIFV 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 410903 416478 - MELO3C018453.2.1 Cme01g00052 317028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00052 455 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 126 331 - -
Cme01g00052 455 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 165 327 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cme01g00052 455 PANTHER GLYCOPROTEIN 3-ALPHA-L-FUCOSYLTRANSFERASE A 126 432 - -
Cme01g00052 455 Gene3D - 133 304 IPR038577 -
Cme01g00052 455 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 126 432 IPR001503 GO:0006486|GO:0008417|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00052 K00753 E2.4.1.214; glycoprotein 3-alpha-L-fucosyltransferase [EC:2.4.1.214] - csv:101205170 650.588
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00052 Cme-Chr1:410903 Cme03g01095 Cme-Chr3:20388597 1.85E-14 dispersed
Cme01g00052 Cme-Chr1:410903 Cme06g01334 Cme-Chr6:11263296 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g408 Blo02g00831 Blo15g00748 Bda06g01072 Bda08g00885 . . Bma05g00514 . Cmo19g00620 . . . . . . . Cpe15g00486 Bhi05g01063 . . . . . . Cla02g00602 Cam02g0631 Cec02g0631 Cco02g0650 Clacu02g0635 Cmu02g0631 Cre02g0955 . . Cone3ag1179 Cone10ag0987 . Csa07g00757 . Cme01g00052 . . . . . . . . . . . . Cma19g00602 . Car19g00455 Cpe14g00294 Cpe01g00439 . . . . . . . . . . . . . . . . Chy01g00056 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT1G14080 55.9 2.3e-153 539.3
Cme12g01977 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.4 3.7e-151 531.9
Cme10g00393 . 99 566 Xyloglucan Fucosyltransferase1 AT1G14100 59.4 2.0e-162 569.3
Cme12g01977 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 5.4e-160 561.2
Cme10g00393 . 79 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.1 2.9e-139 492.3
Cme12g01977 . 112 582 Xyloglucan Fucosyltransferase1 AT1G14110 52.3 6.2e-134 474.6
Cme06g01334 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 61.9 1.7e-182 636.0
Cme01g00052 . 128 455 Xyloglucan Fucosyltransferase1 AT1G49710 75.1 1.2e-148 523.5
Cme03g01095 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 3.2e-168 588.2
Cme10g00393 . 97 539 Xyloglucan Fucosyltransferase1 AT1G74420 51.6 9.8e-123 437.6
Cme10g00393 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.7 8.6e-183 637.1
Cme12g01977 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.3 1.4e-169 593.2
Cme07g01442 . 40 521 Xyloglucan Fucosyltransferase1 AT2G03210 50.3 1.1e-137 487.3
Cme10g00393 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 62.5 5.1e-196 681.0
Cme12g01977 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.8 1.6e-189 659.4
Cme07g01442 . 28 521 Xyloglucan Fucosyltransferase1 AT2G03220 50.8 1.2e-147 520.4
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 55.0 3.4e-154 542.0
Cme12g01977 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 50.8 2.0e-146 516.2
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.5 9.3e-147 517.3
Cme12g01977 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 50.8 2.6e-141 499.2
Cme10g00393 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 1.3e-148 523.5
Cme12g01977 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.3 5.7e-144 508.1
Cme06g01334 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 8.9e-184 640.2
Cme01g00052 . 128 455 Xyloglucan Fucosyltransferase1 AT3G19280 76.8 3.1e-152 535.4
Cme10g00393 . 97 539 Xyloglucan Fucosyltransferase1 AT1G74420 51.6 9.8e-123 437.6
Cme10g00393 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.7 8.6e-183 637.1
Cme12g01977 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.3 1.4e-169 593.2
Cme07g01442 . 40 521 Xyloglucan Fucosyltransferase1 AT2G03210 50.3 1.1e-137 487.3
Cme10g00393 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 62.5 5.1e-196 681.0
Cme12g01977 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.8 1.6e-189 659.4
Cme07g01442 . 28 521 Xyloglucan Fucosyltransferase1 AT2G03220 50.8 1.2e-147 520.4
Cme10g00393 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.7 8.6e-183 637.1
Cme12g01977 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.3 1.4e-169 593.2
Cme07g01442 . 40 521 Xyloglucan Fucosyltransferase1 AT2G03210 50.3 1.1e-137 487.3
Cme10g00393 . 97 539 Xyloglucan Fucosyltransferase1 AT1G74420 51.6 9.8e-123 437.6
Cme10g00393 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 1.3e-148 523.5
Cme12g01977 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.3 5.7e-144 508.1
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.5 9.3e-147 517.3
Cme12g01977 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 50.8 2.6e-141 499.2
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT1G14080 55.9 2.3e-153 539.3
Cme12g01977 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.4 3.7e-151 531.9
Cme10g00393 . 99 566 Xyloglucan Fucosyltransferase1 AT1G14100 59.4 2.0e-162 569.3
Cme12g01977 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 5.4e-160 561.2
Cme10g00393 . 79 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.1 2.9e-139 492.3
Cme12g01977 . 112 582 Xyloglucan Fucosyltransferase1 AT1G14110 52.3 6.2e-134 474.6
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 55.0 3.4e-154 542.0
Cme12g01977 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 50.8 2.0e-146 516.2
Cme06g01334 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 8.9e-184 640.2
Cme01g00052 . 128 455 Xyloglucan Fucosyltransferase1 AT3G19280 76.8 3.1e-152 535.4
Cme06g01334 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 61.9 1.7e-182 636.0
Cme01g00052 . 128 455 Xyloglucan Fucosyltransferase1 AT1G49710 75.1 1.2e-148 523.5
Cme03g01095 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 3.2e-168 588.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00052 Cme_Chr01 FPKM 123.579514 125.792175 130.607635 131.616364 119.203102 119.917595 120.864983 150.062683 151.181274 166.003311