Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00052 ATGCGGCTATGGTGGATTCTTGGGTCGACTTGTTCTATGGATCTCCGATTTTGCGAGAAGGGAATGGAGGTGGTAGTAAAACGGGCACTGGAATTTCTATTAATGATGGAGGGATTGATGGAATTAGCTGTGAGCAGTGGCTGGAGAAGGAGGATGCCGTGGAGTATTCTAGGGACTTCAAAAGGGAACCTGTTTTGGTTTCTGGCTCCGAGAAGGAGTGGAGAACTTGTGATGTGGGATGCCAATTTGGATTTAATCCTGGACAGCAGCCTGATGCTATATTCGGATCACCTAATCAAGGTAGTGTTGCTAGTGTACTTCGATCCATGGAATCATCACATTACTATCCTGAGAACAATATTGATTTGGCAAGACGGTGGGAAGGGTTATACCGTGGTTATGACCACTAGTCTATCATCAGATGTCCCTGTTGGATATTTTTCATGGGCAGAATACGATATAATGGCACCAGTGCAGCCAAAGACCGAGCCTGCCCTTGCAGCTGCCTTCATTTCAAATTGTGGTGCTCGCAACTTCCGTTTGCAAGCTCTTGATGCGCTTGAGAAGTTGAATGTCAAAATTGATTCATATGGTAGCTGCCACCGGAACCGCGATGGAAGAGTTGACAAAGTGGAAACGTTGAAGCGCTACAAGTTCAGCTTGGCATTTGAGAATTCCAATGAAGAAGATTATGTCACGGAAAAGTTTTTTCAATCTCTTGTTGCAGGAACCATTCCGGTGGTGGTTGGTGCTCCAAACATCAAGGAGTTTGCTCCTTCTCCTGATTCATTTTTGCATATCAAGGAGTTTTCTGATGTTGAGTCGATTGCCAAGTCCATGAAATACCTTGCTGAAAATCCCAAAATATACAATCAATCTCTAAGATGGAAGTATGATGGTCCATCCGAGTCTTTCAAGGCCCTTGTCGATATGGCAGCAGTGCACTCATCCTGCCGCCTTTGCATCCATATGGCAACCGTCATCCACGAGAAAGAAGAAAACAGTCCCAGGTTCAAGAAACGACCGTGCAAGTGTTCTCGAGGCTCTGAAACCATGTATCATTTATACATAAGGGAGAGGGGGAGGTTTGAAATGCAATCCATATTTTTGAGGTCAGGAAATTTGACGTTGGAGGCTTTAGAATCAACTGTGCTAAACAAGTTCAATTCTTTGAAACACGTACCGATTTGGAAGGAAGAAAGGCCTGAAAGCGTAAGAGGAGGAGATGAACTAAAACTATACAGAATATATCCTGTTGGATTGACTCAAAGGCAGGCTTTATATACCTTCAGATTCAAAGGCAATGACGATTTCAGAACTCACATAGAAACACACCCTTGTGCAAAGATGGAAGTCATATTTGTCTGA 1368 43.79 MRLWWILGSTCSMDLRFCEKGMEVVVKRALEFLLMMEGLMELAVSSGWRRRMPWSILGTSKGNLFWFLAPRRSGELVMWDANLDLILDSSLMLYSDHLIKVVLLVYFDPWNHHITILRTILIWQDGGKGYTVVMTTSLSSDVPVGYFSWAEYDIMAPVQPKTEPALAAAFISNCGARNFRLQALDALEKLNVKIDSYGSCHRNRDGRVDKVETLKRYKFSLAFENSNEEDYVTEKFFQSLVAGTIPVVVGAPNIKEFAPSPDSFLHIKEFSDVESIAKSMKYLAENPKIYNQSLRWKYDGPSESFKALVDMAAVHSSCRLCIHMATVIHEKEENSPRFKKRPCKCSRGSETMYHLYIRERGRFEMQSIFLRSGNLTLEALESTVLNKFNSLKHVPIWKEERPESVRGGDELKLYRIYPVGLTQRQALYTFRFKGNDDFRTHIETHPCAKMEVIFV 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 410903 416478 - MELO3C018453.2.1 Cme01g00052 317028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00052 455 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 126 331 - -
Cme01g00052 455 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 165 327 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cme01g00052 455 PANTHER GLYCOPROTEIN 3-ALPHA-L-FUCOSYLTRANSFERASE A 126 432 - -
Cme01g00052 455 Gene3D - 133 304 IPR038577 -
Cme01g00052 455 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 126 432 IPR001503 GO:0006486|GO:0008417|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00052 Cme-Chr1:410903 Cme03g01095 Cme-Chr3:20388597 1.85E-14 dispersed
Cme01g00052 Cme-Chr1:410903 Cme06g01334 Cme-Chr6:11263296 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00052 K00753 - csv:101205170 650.588