Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00054 ATGGCCGCCTCCATCTCTTTCTCTACTCCTCAAACTCATCCCCACCGCATTTCCCCTTACTCTAACCTCAATTCCCTTCGCCTTTTCTCTCCTCCTTCTAATCTCCGTATCAATCGCCGTCCTAATCCTCGAAATGCTTCTCTCACTCTCAACATCCAATGCATCAGTCAACCTAAAGCTGAGGTGGTTACTAAAGACTCATGGAACAAAATGATTCTAGAGAGCGGAACCCCTGTCCTGGTTGAATTTTATGCTAGTTGGTGTGGACCGTGTAGAATGGTGCATCGAGTCATTGATGAGTTAGCTGCTGAATATGAGGGGAAGCTGAAATGCTTTGTGCTCAACACCGACACTGATCTGCAAGTAGCTGAAGACTACGAAATTAAGGCTGTTCCTGTGGTTATGCTGTTCAAGAACGGGGAGAAATGTGATAGCGTCATCGGAACAATGCCAAAAGATTTCTATATTGCTGCCGTTGAAAGGGTCCTGAAGCAGTAG 498 45.98 MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKAEVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDLQVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 426128 428776 - MELO3C018455.2.1 Cme01g00054 317030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00054 165 ProSitePatterns Thioredoxin family active site. 80 98 IPR017937 -
Cme01g00054 165 SUPERFAMILY Thioredoxin-like 53 163 IPR036249 -
Cme01g00054 165 ProSiteProfiles Thioredoxin domain profile. 39 165 IPR013766 -
Cme01g00054 165 Pfam Thioredoxin 61 157 IPR013766 -
Cme01g00054 165 Gene3D Glutaredoxin 61 165 - -
Cme01g00054 165 PANTHER GEO12009P1 31 165 - -
Cme01g00054 165 CDD TRX_family 66 160 - -
Cme01g00054 165 PRINTS Thioredoxin family signature 79 87 - -
Cme01g00054 165 PRINTS Thioredoxin family signature 87 96 - -
Cme01g00054 165 PRINTS Thioredoxin family signature 127 138 - -
Cme01g00054 165 TIGRFAM thioredoxin: thioredoxin 64 160 IPR005746 GO:0015035
Cme01g00054 165 PANTHER THIOREDOXIN M3, CHLOROPLASTIC 31 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00054 K03671 trxA; thioredoxin 1 - csv:101204685 304.679
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00054 Cme-Chr1:426128 Cme03g00422 Cme-Chr3:5831664 1.62E-36 dispersed
Cme03g01478 Cme-Chr3:24009344 Cme01g00054 Cme-Chr1:426128 7.34E-10 dispersed
Cme01g00054 Cme-Chr1:426128 Cme08g00895 Cme-Chr8:5876569 4.12E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g400 . . . . . . . . . Cmo11g01367 . . . . . Cpe04g00283 . . . . . . . . Cla02g00604 Cam02g0633 Cec02g0633 Cco02g0652 Clacu02g0637 Cmu02g0633 Cre02g0957 . . . . . . . Cme01g00054 Blo04g00487 . . Bda14g00516 Bpe15g00898 . Bma03g00517 . . . . . . Car11g01093 . . . . . . . . . . . . . . . . . . . Chy01g00058 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008931 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 1 3 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00054 Cme_Chr01 FPKM 30.338543 33.281456 17.917101 18.581745 14.274217 16.539616 15.673149 16.11261 15.211417 15.606677