Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00060 ATGGAGATTGCACCGGCGGCTGCGCCTTCGATCGACAGAGATGCTGCCTCTGTGGATGCAGTTCAACCATCGTCTTCATCGACGGATTCTGTACCAGGGAACGAGGCGAACTTGTCCACGTCTTTTCCTGGACCTAAGTATGATGACGATGAAGAGGAAGAGGACGTCTGCCGGATCTGTAGGAACCCTAGAGATGCGGATAACCCGCTAAGTTATCCCTGCGCTTGCAGTGGCAGCATCAAGTTTGTTCACCAGGACTGTCTCCTTCAATGGCTTAATCACAGCAACGCCCGTCAGTGCGAGGTTTGCAAACATGCATTTTCCTTCTCCCCTGTTTACGCCGAGAATGCTCCATCAAGGCTACCTTTTCAGGAATTTATTTTTGGAATAGCAATGAAAGCTTGCCATGTCCTGCAGTTCTTTTTACGACTAAGTTTTGTGCTCTCTGTTTGGCTACTCATCATACCTTTCATTACTTTTTGGATATGGCGGTTGGCTTTTGTGAGAAGTTTTGGGGAAGCTCAGAGATTATTCTTGAGTCACTTGTCTGCTACTGTTGTTCTTACTGATTGTCTTCATGGCTTCCTACTCTCTGCTAGCATTGTATTTATATTTCTTGGAGCTACCTCCTTGAGAGATTACTTCAGGCATTTGCGGGAACTTGGAGGTCAGGATGGCGAGCGAGAAGATGATGCAGATAGAAACGGAGCTCGTGCTGTAAGAAGACCTCCAGGACAAGCTAACAGAAATTTTGCTGGTGACGCTAATGGTGAAGATGCGGGTGGTGCCCCAGTACTTGCTGGAGCAGGTCAAATGATTAGGAGGAATGCAGAAAATGTTGCTGCTCGGTGGGAGATGCAGGCTGCTCGTCTTGAAGCTCACGTGGAACAGATGTTTGATGTGGATGATGCTGATGGTGCAGAAGATGTTCCCTTTGATGAGCTTGTTGGCATGCAGGGTCCTGTCTTAGCCAGCAATATGATATTTCTTGGTGTCGTTATCTTCGTGCCCTTTACACTAGGTCGGATCATACTTCATTACGCATCGTGGCTTTTCTCTTCAGCCAGTGGTCCTGTTTTCTCAACTATGATGCCACTTACTGAGTCAGCTCTCTCCTTAGCAAATATTACATTGAAAAATGCATTGACAGCTGTTGCAAATTTGTCATCAGATGGTAAAGAAAGTGGTCTACTGGATCAGGTTGCAGAAATGTTGAAAGTCAACTCCAGTACATTAAACGATGTCTCAAACAACATAACTGCTCCACTTTCGGTAGATCTTTTGAAAGGGGCTGCCACTGGAGGTTCAAGGCTTTCTGATGTTACAACTCTCGCTGTAGGCTACATATTTATATTTTCTTTAGTTTTCTTCTATCTTGGTACTATTGCATTGATTCGTTACACGAGAGGAGAACCTTTGACTATGGGGAGGCTGTACGGCATTGCATCCGTAGCTGAGGCTATCCCTTCTCTCCTTAGGCAGTTCATGGCAGCAATGAGGCATTTGATGACCATGGTTAAGGTTGCTTTTCTCTTGGTCATAGAACTTGGGGTATTCCCCTTGATGTGTGGCTGGTGGCTTGACATTTGTACTGTAAGGATGTTTGGGAAGTCAATGGCTCAACGTGTTCAGTTCTTCTCAATTTCTCCTCTTGCAAGCTCATTGGTTCACTGGGCTGTTGGCATTGTATATATGCTACAAATAAGCATATTTGTCAATCTACTTCGAGGGGTTTTGCGCAGTGGAGTTCTGTACTTTCTTCGTGATCCGGCTGACCCAAATTATAACCCTTTCCGAGATTTAATCGACGATCCTATGCACAAGCATGCTCGCAGGGTTCTTCTATCTATTGCAGTTTATGGAAGTTTAATTGTAATGCTGGTGTTCTTACCTGTGAAGCTTGCTATGAGGATGGTGCCCTCCATTTTTCCTCTTGATATATCGGTATCGGATCCCTTCACAGAGATTCCGGCTGACATGCTTCTGTTTCAAATCTGCATCCCTTTTGCAATTGAGCATTTTAAATTGAGAACAACAATCAAATCGCTTCTTCACTGCTGGTTTACTGTAGTCGGTTGGGCCCTTGGGCTAACAGATTATTTACTTCCCAGAACTGAAGAAAATGTTGGTCAAGAAAATGGGAATGGAGAGCCTGGGTTGCAAGAAGAACTGCAGGTGGTACATCTAGGTGGACAGGATCAGGCTTTGGTGGCTCATGCTGCAGCTAACGACCCAAACCAAGTTCCTGCGTCTGGAAACTTGAGTAATGAGGAGTATGATAGCGAAGAGCAGACTGATTCAGAGAGGTATAGCTTTGCTCTCCGCATTGTCCTTTTGTTGGTTGTGGCATGGATGACTCTTCTTGTCTTCAACTCAGCATTGATAGTGGTACCAACTTCACTTGGACGGGCACTTTTCAATGCCATTCCACTTCTTCCCATCACACATGGCATCAAGTGCAATGACATGTATGCATTTGTCATCGGGAGCTACGTTATTTGGACAGCAATAGCTGGTGCCAGATATTCCATTGAATATGTCAGAGCAAGGAGGGTGACAGTTTTGCTGGGCCAGATTTGGAAATGGTTTGCCATTGTCGTCAAGAGTTCTGCACTTCTATCAATTTGGATCTTTCTCATTCCGGTGTTGATTGGCTTATTATTTGAGCTTCTAGTCATTGTGCCTATGCGAGTCCCAGTGGATGAAAGCCCAGTTTTCCTCTTGTATCAGGACTGGGCATTGGGCTTAATTTTTCTTAAAATCTGGACTAGATTGGTAATGTTAGATCATATGATACCACTGGTAGATGATAGTTGGAGAGTAAAGTTCGAAAGAGTTAGAGAAGATGGCTTTTCCAGGCTGCAAGGACTCTGGGTTTTGCGGGAAATAGTCGTGCCAATTATAATGAAGCTGCTGACAGCACTATGCGTACCGTACGTACTAGCTAGGGGAGTATTTCCCGTATTTGGGTACCCACTGATCGTTAACTCAGCTGTTTATCGATTTGCTTGGATTGGATGCCTTTGTGTTAGCATGTTGTATTTCTGTGCCAAGAGATTTCATGTTTGGTTCACCAACCTTCACAATTCCATTCGTGATGATCGATATCTCATTGGTCGTCGACTCCATAACTTTGGCGAGGATTCTGAAGAGAAGCAAATTGATGTGGGGACTCCATTGGAGACACAAAATGCACATTTGTTGGGCACCGGCCATGCAGCAGTGGCTGGTGAAGGATTGCGGCTGAGACGAGTTGTTGGTAACTGA 3267 45.03 MEIAPAAAPSIDRDAASVDAVQPSSSSTDSVPGNEANLSTSFPGPKYDDDEEEEDVCRICRNPRDADNPLSYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPSRLPFQEFIFGIAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHLSATVVLTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQDGEREDDADRNGARAVRRPPGQANRNFAGDANGEDAGGAPVLAGAGQMIRRNAENVAARWEMQAARLEAHVEQMFDVDDADGAEDVPFDELVGMQGPVLASNMIFLGVVIFVPFTLGRIILHYASWLFSSASGPVFSTMMPLTESALSLANITLKNALTAVANLSSDGKESGLLDQVAEMLKVNSSTLNDVSNNITAPLSVDLLKGAATGGSRLSDVTTLAVGYIFIFSLVFFYLGTIALIRYTRGEPLTMGRLYGIASVAEAIPSLLRQFMAAMRHLMTMVKVAFLLVIELGVFPLMCGWWLDICTVRMFGKSMAQRVQFFSISPLASSLVHWAVGIVYMLQISIFVNLLRGVLRSGVLYFLRDPADPNYNPFRDLIDDPMHKHARRVLLSIAVYGSLIVMLVFLPVKLAMRMVPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLHCWFTVVGWALGLTDYLLPRTEENVGQENGNGEPGLQEELQVVHLGGQDQALVAHAAANDPNQVPASGNLSNEEYDSEEQTDSERYSFALRIVLLLVVAWMTLLVFNSALIVVPTSLGRALFNAIPLLPITHGIKCNDMYAFVIGSYVIWTAIAGARYSIEYVRARRVTVLLGQIWKWFAIVVKSSALLSIWIFLIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMIPLVDDSWRVKFERVREDGFSRLQGLWVLREIVVPIIMKLLTALCVPYVLARGVFPVFGYPLIVNSAVYRFAWIGCLCVSMLYFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEDSEEKQIDVGTPLETQNAHLLGTGHAAVAGEGLRLRRVVGN 1088
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 459065 464673 + MELO3C018461.2.1 Cme01g00060 317036

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00060 1088 Coils Coil 274 294 - -
Cme01g00060 1088 ProSiteProfiles Zinc finger RING-CH-type profile. 49 110 IPR011016 GO:0008270
Cme01g00060 1088 SMART ringv_2 56 104 IPR011016 GO:0008270
Cme01g00060 1088 Pfam RING-variant domain 57 103 IPR011016 GO:0008270
Cme01g00060 1088 MobiDBLite consensus disorder prediction 1 50 - -
Cme01g00060 1088 SUPERFAMILY RING/U-box 51 107 - -
Cme01g00060 1088 PANTHER ZINC FINGER, RING-CH-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 43 1035 - -
Cme01g00060 1088 PANTHER SSM4 PROTEIN 43 1035 - -
Cme01g00060 1088 MobiDBLite consensus disorder prediction 225 259 - -
Cme01g00060 1088 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 115 IPR013083 -
Cme01g00060 1088 MobiDBLite consensus disorder prediction 19 41 - -
Cme01g00060 1088 CDD RING_CH-C4HC3_MARCH6 56 105 - -
Cme01g00060 1088 ProSiteProfiles Zinc finger RING-type profile. 57 104 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00060 K10661 MARCH6, DOA10; E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27] - csv:101222781 2131.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00060 Cme-Chr1:459065 Cme11g01968 Cme-Chr11:27685119 1.91E-13 dispersed
Cme01g00060 Cme-Chr1:459065 Cme11g01796 Cme-Chr11:26114074 1.09E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g385 . Blo15g00755 Bda06g01078 . Bpe07g00369 . . Bma12g00433 Cmo19g00615 Cmo11g01375 . . . . . Cpe04g00289 Cpe15g00481 Bhi05g01074 . . . . . . Cla02g00612 Cam02g0641 Cec02g0640 Cco02g0661 Clacu02g0645 Cmu02g0640 Cre02g0964 . . Cone3ag0981 Cone10ag1001 . Csa07g00748 . Cme01g00060 . . . . . . . . . . . Cma11g01740 Cma19g00597 . . . . . . . . . . . . . . . . . . . . Chy01g00063 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005956 2 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00060 Cme_Chr01 FPKM 0.55914 1.097672 0.593668 0.578111 1.474881 0.862808 0.796426 1.90172 0.828526 1.678077