Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00061 ATGGCTCAGGTTCCACCTCAACCTCAAGTTCCTAACTCCGGCGCCGATCCGGCTGCCAATGGAGGCGCAAATCAGCATGTCACCACCTCCCTGTATGTTGGGGATCTTGACGTTAACGTCACCGATTCCCAGCTTTATGATCTTTTTAATCAGGTGGGGCAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTAACCAGTCGTCGATCGCTTGGTTATGGCTATGTCAATTACAGCAACCCAGTGGATGCTTCAAGGGCATTAGATGTGCTAAACTTCACCCCTTTGAATGGAAATCCTATTAGAGTCATGTATTCTCATCGTGACCCTAGCGTGCGGAAAAGTGGGTCTGGAAACATTTTTATCAAGAACTTGGACAAGGCAATTGATCACAAAGCCTTGCATGATACTTTTTCTGCATTTGGAAGTATTCTATCTTGCAAGGTTGCTACAGATTCATCAGGCCAGTCTAAGGGCTTTGGTTTTGTGCAATTTGACACCGAGGAAGCTGCCTTAAAAGCTATAGAAAAGTTGAATGGTATGCTGCTAAATGACAAGCAGGTGTTTGTGGGACCTTTCCTTCGCAAGCAAGAAAGAGAAAGTGTCAGCGAGAAAACAAAATTCAATAACGTTTTTGTCAAAAATCTAGCAGAAACTACCTCTGAAGAAGATTTGAAAAATATGTTTGGGGAGTTCGGACCAATCACCAGTGTTGTGGTGATGAGGGATGGAGAAGGAAAATCAAAATGCTTTGGCTTTGTAAATTTTGAGAATGCGGATGATGCCGCCAGATCTGTTGAAGCACTTAATGGAAAGAAGGTTGATGGGAAAGAGTGGTACGTTGGAAAAGCCCAGAAGAAATCTGAAAGAGAAGTTGAACTGAAAAATCGATTTGAACAGAGTGTAAAAGAAGCCGCTGACAAGTATCAAGGGGCAAACTTATATGTTAAGAATTTAGATGATAGCATCGATGATGACAAACTAAAGGAGTTATTCACTGGTTTTGGAACCATTACCTCATGCAAGGTTATGCGTGACCCCAATGGAATCAGTAGAGGATCTGGCTTTGTTGCATTCTCTTCTCCTGAAGAGGCTGCAAGAGCTCTTGCTGAGATGAATGGAAGAATGATTGTGAGCAAACCTCTTTATGTTGCACTTGCACAGAGGAAGGAAGATAGAAGAGCTAGGTTGCAAGCACAGTTTTCCCAAATGCAGCCAATGGCGATGGCATCTTCAGTTGCTCCTCGTGGCATGCCAATGTATCCTCCAGGTGGTCCAGGTATCGGACAACAAATATTCTATGGACAAGCTCCACCTACTATTATTTCCTCACAGAGTCAAATTGTGACTGCATTCAAATCATTCTGTGAATTTTTTCAGCCTGGCTTTGGTTATCAACAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCCATGCCAAATTTCTTTGTGCCGATGGTTCAGCAGGGCCAGCAAGGGCAAAGATCAGGTGGCAGACGTGCTGGTGCCATTCAGCAAACCCAGCAGCCTGTTCCTTTGATGCAGCAGCAGATGCTACCTAGAGGACGCGTCTACCGTTATCCTCCTGGACGTGGACTGCCTGATCTTCCCATGCCTGGTGTTGCTGGAGGAATGTTCTCTGTTCCATATGAGATGGGTGGAATGCCACCACGTGATGCTGTTCACCCTCAACCAGTTCCTGTGGGTGCTTTGGCTTCTGCTCTTGCAAATGCAACTCCAGACCAGCAGAGAACGATGCTGGGGGAGAACCTTTATCCACTTGTTGAACAGCTAGAACCTGATAATGCGGCCAAGGTAACAGGAATGCTATTGGAAATGGACCAAACTGAGGTTCTACATTTGCTTGAGTCGCCCGAAGCTCTGAAAGCGAAGGTGGCAGAAGCAATGGAGGTTTTAAGAAGTGTCGCTCAGCAGACCGGCAATGCAGCTGATCAATTGGCTTCACTATCCTTGACTGACAATCTTGATTCTTAA 1995 45.61 MAQVPPQPQVPNSGADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQSQIVTAFKSFCEFFQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQTGNAADQLASLSLTDNLDS 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 465786 470108 - MELO3C018462.2.1 Cme01g00061 317037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00061 664 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Cme01g00061 664 CDD RRM1_I_PABPs 30 109 - -
Cme01g00061 664 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Cme01g00061 664 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 640 IPR006515 GO:0003723
Cme01g00061 664 PANTHER RNA BINDING PROTEIN 18 649 - -
Cme01g00061 664 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Cme01g00061 664 Gene3D - 562 646 - -
Cme01g00061 664 SMART poly_2 579 642 IPR002004 GO:0003723
Cme01g00061 664 Gene3D - 199 295 IPR012677 -
Cme01g00061 664 Gene3D - 296 400 IPR012677 -
Cme01g00061 664 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Cme01g00061 664 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Cme01g00061 664 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Cme01g00061 664 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Cme01g00061 664 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Cme01g00061 664 Gene3D - 5 110 IPR012677 -
Cme01g00061 664 Gene3D - 111 198 IPR012677 -
Cme01g00061 664 SUPERFAMILY RNA-binding domain, RBD 208 391 IPR035979 GO:0003676
Cme01g00061 664 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 567 644 IPR002004 GO:0003723
Cme01g00061 664 SMART rrm1_1 30 103 IPR000504 GO:0003723
Cme01g00061 664 SMART rrm1_1 312 384 IPR000504 GO:0003723
Cme01g00061 664 SMART rrm1_1 209 281 IPR000504 GO:0003723
Cme01g00061 664 SMART rrm1_1 118 190 IPR000504 GO:0003723
Cme01g00061 664 MobiDBLite consensus disorder prediction 1 23 - -
Cme01g00061 664 Pfam Poly-adenylate binding protein, unique domain 575 639 IPR002004 GO:0003723
Cme01g00061 664 CDD RRM3_I_PABPs 207 286 - -
Cme01g00061 664 SMART rrm2_1 312 384 IPR003954 GO:0003676
Cme01g00061 664 SMART rrm2_1 118 190 IPR003954 GO:0003676
Cme01g00061 664 SMART rrm2_1 209 281 IPR003954 GO:0003676
Cme01g00061 664 SMART rrm2_1 30 103 IPR003954 GO:0003676
Cme01g00061 664 CDD RRM4_I_PABPs 310 388 - -
Cme01g00061 664 CDD RRM2_I_PABPs 115 191 IPR045305 -
Cme01g00061 664 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Cme01g00061 664 PANTHER POLYADENYLATE-BINDING PROTEIN 18 649 - -
Cme01g00061 664 SUPERFAMILY PABC (PABP) domain 508 653 IPR036053 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00061 Cme-Chr1:465786 Cme12g01482 Cme-Chr12:22470843 3.45E-10 dispersed
Cme08g01041 Cme-Chr8:6745836 Cme01g00061 Cme-Chr1:465786 2.76E-12 dispersed
Cme01g02854 Cme-Chr1:35390722 Cme01g00061 Cme-Chr1:465786 6.58E-07 transposed
Cme03g01068 Cme-Chr3:20043267 Cme01g00061 Cme-Chr1:465786 0 transposed
Cme04g02273 Cme-Chr4:29745994 Cme01g00061 Cme-Chr1:465786 1.41E-10 transposed
Cme04g02457 Cme-Chr4:31131751 Cme01g00061 Cme-Chr1:465786 1.23E-18 transposed
Cme05g00257 Cme-Chr5:1885483 Cme01g00061 Cme-Chr1:465786 1.56E-12 transposed
Cme06g00357 Cme-Chr6:2206956 Cme01g00061 Cme-Chr1:465786 6.34E-09 transposed
Cme06g00868 Cme-Chr6:5944959 Cme01g00061 Cme-Chr1:465786 3.78E-06 transposed
Cme07g01229 Cme-Chr7:16858869 Cme01g00061 Cme-Chr1:465786 3.26E-08 transposed
Cme09g02022 Cme-Chr9:23900559 Cme01g00061 Cme-Chr1:465786 3.79E-07 transposed
Cme11g02454 Cme-Chr11:31263017 Cme01g00061 Cme-Chr1:465786 1.97E-11 transposed
Cme12g00016 Cme-Chr12:212231 Cme01g00061 Cme-Chr1:465786 3.31E-06 transposed
Cme07g01596 Cme-Chr7:21725237 Cme01g00061 Cme-Chr1:465786 8.39E-06 transposed
Cme01g00061 Cme-Chr1:465786 Cme06g01347 Cme-Chr6:11512384 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00061 K13126 - csv:101223017 1197.57