Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00072 ATGAAAATGGCCACAACCTCTGCCTTTGCAATTTTATCCATCTTTAATCTCCTCCTCTTCTCCACATTTGCTGCTGTCGCTCTCGATATCGGTATCGGCATCGGCATTGGCGGCAATGGAAAGACCCCTCCGCCGTCGGAATCCCCTGATTGCAACACTCCTCCTCCTCCACCACCACCACCACCACCACCTCCTCCTCCTCCTCCACCGCTGCCAAAGCCGCCAAAAAAGCAACCACCACCGACCTCCCCAAAAAATCCTCCAAAGAAACCCCCGGCGCTGCGATTTGAGAGCGAGAGAATTAAAATTGCGTATTATGTGATAAAAAACTACAAAAGTAGAATCGAGAATGACCCATTGCAGATTAAGAAAACATGGGTTGGGACAAACGTTTGTAATTACACAGGATTCAGTTGTGAAGTAGTTCCCAATTACGGAAAACAGAGAGGGGTTTCGGGCCTTAGCTTCAACAATTTCAATTTCAGTGGCCGAAGATTGAGCCTGGATGGGCTGGTGGAAAAGCTGCCGGATCTCACATTCTTCCATGCGAATTCAAACTTCTTCTTCTCCACCATCCCCAAACTCATCTCCACCGTCAACTTCTTTTACGAGCTCGATCTTAGCAATAACAACTTTACAGGGCCGTTCCCGAGTGAAGTCCTGGGCGCCGTTAATCTGACCTTCTTGGACATCCGGTTCAATCAATATTACGGTCCGATTCGATCAGAGTTGTTTGACATGGATATTATCACCGCCATCTTTCTCAACAACAATAAGTTTAATCAGGACATTCCTGCCAACCTCGGCAACACCCCTGCTCGGTACCTAACGTTCACGAGCAACGAGTTCACCGGCCCAATCCCAAAAAGCATCGGAATCGGAAAAACAAAGAAGAACCTAATCGAAGTTCTGTTCTCCGACAACAAGCTTTCCGGCTGCTTACCCATGGAGATCGGTCTCTTAGAGAACACCGTTCTCTTCAACGCAAGCAAAAACTCCCTCACCGGCCCAATCCCATACTCCTTTTGCTGCTTAACCAAAATGCAGATTCTCAATTTCTCCGACAACAACTTATACGGCGCCGTGCCTGAGGACGTCTGTAAATTACCCAACCTCCAAAGATTCAACCTTCGCAACAATTTCTTTACCCAAGTCGGCCCCATCTGCCGGAGCTTGATCTGGAAGGACGTCCTAGACGTTTCTGGAAACTGCATTTTGGGTCTGCCGAAACAGAGGCCGGAGAAGGAATGTACGTACTTCTTTAGCAAACCTCATTCTTGTCCTGATGACAAGTCCATGAAGATCATTCCTTGTAAGGCTACGGATTACCGGCCCCATCCACCACCACCGAGGAAGCTGACGGAGATGAGAACTTATGCCGCTCTTATTCCTAATTGA 1398 48.07 MKMATTSAFAILSIFNLLLFSTFAAVALDIGIGIGIGGNGKTPPPSESPDCNTPPPPPPPPPPPPPPPPPLPKPPKKQPPPTSPKNPPKKPPALRFESERIKIAYYVIKNYKSRIENDPLQIKKTWVGTNVCNYTGFSCEVVPNYGKQRGVSGLSFNNFNFSGRRLSLDGLVEKLPDLTFFHANSNFFFSTIPKLISTVNFFYELDLSNNNFTGPFPSEVLGAVNLTFLDIRFNQYYGPIRSELFDMDIITAIFLNNNKFNQDIPANLGNTPARYLTFTSNEFTGPIPKSIGIGKTKKNLIEVLFSDNKLSGCLPMEIGLLENTVLFNASKNSLTGPIPYSFCCLTKMQILNFSDNNLYGAVPEDVCKLPNLQRFNLRNNFFTQVGPICRSLIWKDVLDVSGNCILGLPKQRPEKECTYFFSKPHSCPDDKSMKIIPCKATDYRPHPPPPRKLTEMRTYAALIPN 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 510118 512166 - MELO3C018472.2.1 Cme01g00072 317048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00072 465 Gene3D Ribonuclease Inhibitor 296 420 IPR032675 -
Cme01g00072 465 Gene3D Ribonuclease Inhibitor 223 295 IPR032675 -
Cme01g00072 465 Gene3D Ribonuclease Inhibitor 107 222 IPR032675 -
Cme01g00072 465 SUPERFAMILY L domain-like 121 407 - -
Cme01g00072 465 MobiDBLite consensus disorder prediction 39 93 - -
Cme01g00072 465 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 24 449 - -
Cme01g00072 465 MobiDBLite consensus disorder prediction 47 91 - -
Cme01g00072 465 PANTHER BNAC05G26270D PROTEIN 24 449 - -
Cme01g00072 465 SUPERFAMILY Formin homology 2 domain (FH2 domain) 60 65 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00072 - - - csv:101217723 719.924
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00072 Cme-Chr1:510118 Cme07g00332 Cme-Chr7:2123243 3.86E-102 dispersed
Cme01g00071 Cme-Chr1:506671 Cme01g00072 Cme-Chr1:510118 2.86E-173 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g378 Blo02g00837 . . . . Bpe12g00047 . . Cmo19g00607 Cmo11g01379 . . . . . Cpe04g00293 Cpe15g00477 Bhi05g01086 . . . . . . Cla02g00623 Cam02g0657 Cec02g0660 Cco02g0683 Clacu02g0665 Cmu02g0660 Cre02g0978 . Cone8ag1115 Cone3ag0990 Cone10ag1008 . Csa07g00736 . Cme01g00072 . . . . . . . Bma08g00812 . . . . Cma19g00588 . Car19g00446 . . . . . . . . . . . . . . . . . . Chy01g00078 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000853 1 2 2 1 2 3 4 3 3 3 3 3 5 3 3 5 3 6 4 3 3 2 1 4 4 4 2 4 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00072 Cme_Chr01 FPKM 11.17837 12.63259 12.312641 11.962193 12.598556 11.91245 14.286223 13.227328 13.347188 13.585084