Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00073 ATGGCGATTTCTTCACCCATTTTCTTCGCTTTTCTTGCCCTTTTCCTCTGTCTTTCCCCTTTTTCATCCGCTTCCCATTCATCCACCTTCTCCATCATTGATGAAAACGCTAAACACCACTTGGGTATCCCTGAAATTCCCCATTCCGATGCCCATCAACGCACCGACGAGGAAGTTGCCGCTTTGTACGAGTCCTGGTTGGTCCATCATGGAAAAGCCTACAATGCTCTTGGTGAGAAGGAGAGACGGTTTGAGATTTTTAAGGATAATCTCATGTTTATTGATGAACATAACCGGGAATCGCGGACGTATAAAGTTGGATTAACCCGTTTTGCTGATCTTACCAATGAGGAATATCGGGCAAGGTTTTTGGGTGGCCGATTCTCCCGGAAGCCTAGCTTATCCGCCGCCAAGAGCGGAAGGTACGCGGCGGCGCTCGGTGATGATCTTCCGGATGATGTCGATTGGAGAAAAAAGGGCGCTGTTGCTAATGTTAAAGATCAAGGACAGTGTGGGAGCTGTTGGGCTTTCTCAACAGTTGCTGCAGTGGAAGGAATAAACCAAATTGTCACTGGCGAATTGATCTCTCTGTCAGAGCAGGAACTTGTGGATTGTGACAAATCATTTAACATGGGTTGCAATGGTGGTCTTATGGACTATGCTTTCCAGTTCATCATTGACAATGGTGGAATTGACACCGACGAAGATTACCCTTACAAGGGACGAGATGGCGCTTGCGATCCCAATCGGAAAAATGCCAAGGTTGTAACCATAGATGGATATGAAGATGTTCCTGAGAATGATGAGAGCTCCTTGAAAAAGGCTGTAGCAAATCAACCAGTTAGTGTTGCAATTGAAGCTGGTGGCAGAGCCTTCCAACTTTACCAATCGGGTGTCTTCACTGGCCGTTGCGGAACCAATCTAGATCATGGTGTTGTTGCTGTTGGATATGGAACCGACAACGGTACAGATTATTGGATTGTGAGGAATTCATGGGGTAAAGACTGGGGAGAGAATGGTTATATCAGGTTGGAGAGAAATGTGGCCAACAGTACCACAGGCAAGTGTGGTATTGCAGTAGAGCCTTCATACCCCATCAAATCCGGATCAAACCCTCCAAAACCTTCTGCTTCTCCCCCATCTCCTGTCAACCCTCCAACTGAATGCGACGAATACTTCTCGTGCGATGAAGGAAGTACCTGCTGCTGTATCTATCAGTATGGAAGCACCTGCTTTGCTTGGGGATGCTGCCCCCTCGAGTCCGCAACCTGCTGTGATGACCATTACAGTTGCTGCCCACATGAATATCCCGTTTGTGACCTTGAGGCAGGAACTTGCCGAGCGAGCAAAGACAGCTTGATGGGCGTCAATCTGCTGAAGCGCCTTCCTGCAAATCAGACAAAGCGGATTCAAAAGCTTGGGAAGTTGTTCGTTGGTGCTTGA 1443 47.75 MAISSPIFFAFLALFLCLSPFSSASHSSTFSIIDENAKHHLGIPEIPHSDAHQRTDEEVAALYESWLVHHGKAYNALGEKERRFEIFKDNLMFIDEHNRESRTYKVGLTRFADLTNEEYRARFLGGRFSRKPSLSAAKSGRYAAALGDDLPDDVDWRKKGAVANVKDQGQCGSCWAFSTVAAVEGINQIVTGELISLSEQELVDCDKSFNMGCNGGLMDYAFQFIIDNGGIDTDEDYPYKGRDGACDPNRKNAKVVTIDGYEDVPENDESSLKKAVANQPVSVAIEAGGRAFQLYQSGVFTGRCGTNLDHGVVAVGYGTDNGTDYWIVRNSWGKDWGENGYIRLERNVANSTTGKCGIAVEPSYPIKSGSNPPKPSASPPSPVNPPTECDEYFSCDEGSTCCCIYQYGSTCFAWGCCPLESATCCDDHYSCCPHEYPVCDLEAGTCRASKDSLMGVNLLKRLPANQTKRIQKLGKLFVGA 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 516480 519680 + MELO3C018473.2.1 Cme01g00073 317049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00073 480 Gene3D Granulin 386 449 IPR037277 -
Cme01g00073 480 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 168 179 IPR000169 -
Cme01g00073 480 SUPERFAMILY Cysteine proteinases 55 366 IPR038765 -
Cme01g00073 480 Gene3D Cysteine proteinases 45 368 - -
Cme01g00073 480 PRINTS Papain cysteine protease (C1) family signature 168 183 IPR000668 GO:0006508|GO:0008234
Cme01g00073 480 PRINTS Papain cysteine protease (C1) family signature 310 320 IPR000668 GO:0006508|GO:0008234
Cme01g00073 480 PRINTS Papain cysteine protease (C1) family signature 325 331 IPR000668 GO:0006508|GO:0008234
Cme01g00073 480 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 44 396 - -
Cme01g00073 480 SUPERFAMILY Granulin repeat 386 420 - -
Cme01g00073 480 CDD Peptidase_C1A 151 365 IPR039417 -
Cme01g00073 480 SMART GRAN_2 389 446 IPR000118 -
Cme01g00073 480 PANTHER CYSTEINE PROTEASE 44 396 - -
Cme01g00073 480 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 308 318 IPR025660 -
Cme01g00073 480 SMART pept_c1 150 366 IPR000668 GO:0006508|GO:0008234
Cme01g00073 480 SMART Inhibitor_I29_2 63 119 IPR013201 -
Cme01g00073 480 Pfam Granulin 400 446 IPR000118 -
Cme01g00073 480 Pfam Papain family cysteine protease 150 366 IPR000668 GO:0006508|GO:0008234
Cme01g00073 480 Pfam Cathepsin propeptide inhibitor domain (I29) 63 119 IPR013201 -
Cme01g00073 480 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 325 344 IPR025661 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00073 K25900 RD21; cysteine proteinase RD21 [EC:3.4.22.-] - csv:101222543 907.901
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g00073 Cme11g01011 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00073 Cme-Chr1:516480 Cme03g01917 Cme-Chr3:27274447 2.04E-137 dispersed
Cme02g00303 Cme-Chr2:2492741 Cme01g00073 Cme-Chr1:516480 4.06E-72 dispersed
Cme01g02365 Cme-Chr1:31982606 Cme01g00073 Cme-Chr1:516480 7.56E-97 transposed
Cme02g00793 Cme-Chr2:10166357 Cme01g00073 Cme-Chr1:516480 2.71E-72 transposed
Cme03g02210 Cme-Chr3:28996809 Cme01g00073 Cme-Chr1:516480 9.24E-109 transposed
Cme05g01743 Cme-Chr5:26460108 Cme01g00073 Cme-Chr1:516480 3.32E-21 transposed
Cme06g01893 Cme-Chr6:22469987 Cme01g00073 Cme-Chr1:516480 4.53E-93 transposed
Cme12g01052 Cme-Chr12:18284392 Cme01g00073 Cme-Chr1:516480 3.42E-44 transposed
Cme01g00073 Cme-Chr1:516480 Cme07g00326 Cme-Chr7:2071505 0 wgd
Cme01g00073 Cme-Chr1:516480 Cme08g00592 Cme-Chr8:3777236 6.43E-171 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g328 . . . . . Bpe12g00163 . . . Cmo11g01384 Cma02g00311 Cma20g00695 Car02g00192 . . Cpe04g00295 . Bhi05g01087 . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . . . . Csa07g00228 . Cme01g00073 Blo04g00616 Blo13g00456 . . Bpe15g00768 . Bma03g00653 Bma08g00825 . Cmo02g00305 Cmo20g00687 . . . . . Cpe05g01328 . . . . . . . Cla02g01045 Cam02g1113 Cec02g1118 Cco02g1152 Clacu02g1099 Cmu02g1059 Cre02g1367 Lsi11g01321 . Chy01g00080 Cme11g01011
Vvi3g605 . . . . . Bpe12g00293 . . Cmo19g00605 . . . . . . Cpe04g00295 Cpe15g00476 . . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . Cone3ag0991 Cone10ag1012 Lsi03g00521 Csa07g00735 . Cme01g00073 . . Bda15g00848 Bda14g01450 . . Bma03g01355 Bma08g00518 . . . Cma11g01732 . Car11g01109 Car19g00445 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001585 7 2 1 3 5 2 3 1 2 1 1 1 2 2 2 1 0 5 4 2 2 2 2 2 2 1 2 5 3 3 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00073 Cme_Chr01 FPKM 6.098591 10.262563 22.771652 25.524048 6.809488 3.408997 6.290997 4.045089 4.034872 3.313601