Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme01g00074 | ATGGATCCAAATTCTACTGATTCCCCAATATCACCTACTGTTAATTCCTCGGAAACTAAACCACCAGAAGTACACCCTCAGGCTCCTGTTACACCTGGAATGAATAATGTAGCCCGTGATGCACCATCTAAGTTATCTCCTAGTGGCTTAACTTCATGGGCCAAAAACTTGAAAATTTCTCAACCACAGTCATCTTCACAAGATGGAGCGACTGAAAATGCTGGGAAGTCAGCTTTTGCACGTTTCACTAGTGGCTTGGGTTTGAACTTATCTCCAAAATCTCCTGCACCTAGTGATTCCCCAGATGGAAATTCTAAACCTGCCCAACCCAGTTTTGTGGGATCAATTACAAAAGGGTTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTTCAAGTTAAAGCTCGTCATGTTGTCTCCCAAAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAATATCATTGCCATGGGTTTTCCTGCTGGTGACATGAGCTCAGGGTTTTTTGGATATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATAAAGTTTTTTGAAACGCATCACAAGGGAAAATACAAAGTATATAATCTTTGTTCGGAGAGGCTATATGATGCTTCATTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCACAACTGTCCCCCAGTTCAACTCATAATATCATTTTGCCAAAGTGCCTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTTCATTGCAAGGCAGGAATGGCCAGGACAGGCTTGATGATTTCCAGTCTTCTTCTATTTTTGAAGTTCTTTCCAACCGCTGAAGAATCCATTGAATACTACAACCAGAGAAGGTGTTTTGATGGCAAAGGTCTGATATTACCAAGTCAGATTAGGTATGTCAAATATTTTGAGCGTATTCTAACATACTTCAATGGAGAAAATCCTCCCAGTCGCAGGTGCGTGCTTAGAGGGTTTCGTCTCCACAGATGCCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTGTTCTGTTCTCCACTAAAGTGCATCCAAGAACCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGATAATGGTCTTCGCCTTGCCTGGGGAGCCTGGTCTAGCTGAGTTGTGTGGGGACTTCAAGGTTCATTTCCACGACCGCCAGGGAGATTTCTATTGTTGGCTAAACACAACCATGACTGAAAATCGGAAAATGCTGTACACAAACGATCTTGATGGGTTCGACAAGAGGAAACTACCTTCCCCTGGGTTTCAGGTGGAGGTTGTTCTAGTAGATACGTCGCCCAACACGGACAACACTACCAAAAAGTCGGATGAAAGCTCAGGCTCCAAGCCTCCTACAGCTGATGGGAGTGAAGTTTCTGAAAACCAAAACAGAAAATCAGGAACTAATGATAAAGATGATGTATTTTCTGATAGTGAATCAGAAGGTGGTTCTTCTAAGAGCAAGAAGGAGGCAACTTCAGGTACAGGGGTTGAAGGATCAGCTGTCAATACAACGACTAAATCTCAAACGAGTATGACTTCATCAGACGATGTTGCGAGTTTATCACATGCAACAAAGCAAGTTTCCCTGGGAGATGGTGGAGCTAAACAGACTGCTACTGCCAGCGAACGAAAAGGCGACGGAGTTGGAAGATCTGATTCTCTCCCAGAAGTTCCAAATTCAGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTTGGCGACGACGAAGACTATGAGAGTGAGTAA | 1839 | 42.9 | MDPNSTDSPISPTVNSSETKPPEVHPQAPVTPGMNNVARDAPSKLSPSGLTSWAKNLKISQPQSSSQDGATENAGKSAFARFTSGLGLNLSPKSPAPSDSPDGNSKPAQPSFVGSITKGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLILPSQIRYVKYFERILTYFNGENPPSRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKVHPRTKSLSPEDFWFTAPKKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLVDTSPNTDNTTKKSDESSGSKPPTADGSEVSENQNRKSGTNDKDDVFSDSESEGGSSKSKKEATSGTGVEGSAVNTTTKSQTSMTSSDDVASLSHATKQVSLGDGGAKQTATASERKGDGVGRSDSLPEVPNSESEFKAMAADASVFTFGDDEDYESE | 612 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 521937 | 528246 | + | MELO3C018474.2.1 | Cme01g00074 | 317050 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme01g00074 | 612 | Gene3D | - | 328 | 458 | - | - | |
| Cme01g00074 | 612 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 346 | 454 | IPR035892 | - | |
| Cme01g00074 | 612 | MobiDBLite | consensus disorder prediction | 1 | 74 | - | - | |
| Cme01g00074 | 612 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 14 | 612 | - | - | |
| Cme01g00074 | 612 | MobiDBLite | consensus disorder prediction | 452 | 593 | - | - | |
| Cme01g00074 | 612 | CDD | PTP_PTEN | 154 | 319 | IPR045101 | GO:0016791 | |
| Cme01g00074 | 612 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 258 | 297 | IPR000387 | GO:0016311|GO:0016791 | |
| Cme01g00074 | 612 | MobiDBLite | consensus disorder prediction | 41 | 73 | - | - | |
| Cme01g00074 | 612 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 144 | 323 | IPR029023 | - | |
| Cme01g00074 | 612 | MobiDBLite | consensus disorder prediction | 87 | 115 | - | - | |
| Cme01g00074 | 612 | PANTHER | PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A | 14 | 612 | - | - | |
| Cme01g00074 | 612 | MobiDBLite | consensus disorder prediction | 490 | 512 | - | - | |
| Cme01g00074 | 612 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 260 | 270 | IPR016130 | GO:0016311|GO:0016791 | |
| Cme01g00074 | 612 | MobiDBLite | consensus disorder prediction | 513 | 562 | - | - | |
| Cme01g00074 | 612 | SMART | PTEN_C2_2 | 328 | 456 | IPR014020 | - | |
| Cme01g00074 | 612 | MobiDBLite | consensus disorder prediction | 86 | 115 | - | - | |
| Cme01g00074 | 612 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Cme01g00074 | 612 | ProSiteProfiles | C2 tensin-type domain profile. | 330 | 457 | IPR014020 | - | |
| Cme01g00074 | 612 | MobiDBLite | consensus disorder prediction | 454 | 489 | - | - | |
| Cme01g00074 | 612 | Gene3D | Protein tyrosine phosphatase superfamily | 129 | 326 | IPR029021 | - | |
| Cme01g00074 | 612 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 157 | 325 | IPR029021 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme01g00074 | Cme-Chr1:521937 | Cme07g00118 | Cme-Chr7:785333 | 6.85E-07 | dispersed | |
| Cme04g02013 | Cme-Chr4:27675599 | Cme01g00074 | Cme-Chr1:521937 | 2.12E-45 | transposed | |
| Cme01g00074 | Cme-Chr1:521937 | Cme08g00594 | Cme-Chr8:3786333 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme01g00074 | K01110 | - | csv:101222304 | 1190.64 |