Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00075 ATGTCGACATATAGCATTCAGGGTCAACCTCTTGAAGTCACCGTTATTGGATGCACAAAGTTGAAAGATACAGAATGGATTTCAAGGCAGGATCCTTACGTGTGTCTTGAATATGGTAGTACAAAGTTTCGTACCACCACTTGCACAGATGGTGGTAGAAATCCAACATTCCAAGAGAAATTTGTTTTTTCTCTTATTGAAGGGCTAAGAGAGATTATTGTCACAGTTTGGAATAGCAATACAGTTACTTATGATGACTTTATTGGCAATGGAAAAATCCAATTGGCTAAAGTTCTAGCAGAAGGGTATGATGATAGCTCATGGTCACTTCAAACTAAAACTGGCAGACATGCTGGGGAAGTACGACTGATACTACATTTCGCAAATGCCAATAGACCTACATCAAGTTTTGCGCCCTCAGCACCACCATTTCATGCACCTACTCCACCCCAAGTCCCTGCGTACGCTACGATGCCACCGCCACCGGCACACCCCACAGCGTACCCTCCTCCTAATGCTACACCCTATGCATCATTCCAATCTCCCTATCCTTCTTACCCACCCAGCTCCGGAACATATCAAACATCCATGTATTCCTCCCCATACCCCCCTGGGTATCCTCCCACATCGTACCCCCCACCTCCCTCGGCTTATCCTCCCAATCCTTACCCACCACCTCCACAAGCCTCACCTTTCTATCCTCCAGGTCCTTACCCTGGAGTTTATCCCCCACCTCAGTATTGA 744 46.64 MSTYSIQGQPLEVTVIGCTKLKDTEWISRQDPYVCLEYGSTKFRTTTCTDGGRNPTFQEKFVFSLIEGLREIIVTVWNSNTVTYDDFIGNGKIQLAKVLAEGYDDSSWSLQTKTGRHAGEVRLILHFANANRPTSSFAPSAPPFHAPTPPQVPAYATMPPPPAHPTAYPPPNATPYASFQSPYPSYPPSSGTYQTSMYSSPYPPGYPPTSYPPPPSAYPPNPYPPPPQASPFYPPGPYPGVYPPPQY 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 530183 533124 + MELO3C018475.2.1 Cme01g00075 317051

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00075 247 ProSiteProfiles C2 domain profile. 1 109 IPR000008 -
Cme01g00075 247 SMART C2_3c 10 107 IPR000008 -
Cme01g00075 247 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU_ORTHOLOGUE AFUA_2G01790) 3 247 - -
Cme01g00075 247 MobiDBLite consensus disorder prediction 146 173 - -
Cme01g00075 247 CDD C2 11 108 - -
Cme01g00075 247 PRINTS Proline rich extensin signature 141 153 - -
Cme01g00075 247 PRINTS Proline rich extensin signature 159 175 - -
Cme01g00075 247 PRINTS Proline rich extensin signature 201 213 - -
Cme01g00075 247 PRINTS Proline rich extensin signature 215 236 - -
Cme01g00075 247 Pfam C2 domain 11 106 IPR000008 -
Cme01g00075 247 MobiDBLite consensus disorder prediction 209 237 - -
Cme01g00075 247 Gene3D C2 domain 9 129 IPR035892 -
Cme01g00075 247 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 129 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00075 - - - csv:101217489 298.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00075 Cme-Chr1:530183 Cme12g00796 Cme-Chr12:14441645 1.01E-08 dispersed
Cme09g01734 Cme-Chr9:21900040 Cme01g00075 Cme-Chr1:530183 3.67E-17 transposed
Cme01g00075 Cme-Chr1:530183 Cme07g00324 Cme-Chr7:2063032 3.29E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g608 . . . . . Bpe12g00295 . . Cmo19g00604 Cmo11g01385 . . . . . Cpe04g00297 Cpe15g00474 . . . . . . . Cla02g00626 Cam02g0659 Cec02g0663 Cco02g0686 Clacu02g0667 . Cre02g0980 . . Cone3ag0993 Cone10ag1014 Lsi03g00523 Csa07g00733 . Cme01g00075 . . . . . . . . . . . Cma11g01729 Cma19g00586 Car11g01111 . . . . . . . . . . . . . . . . . . . Chy01g00081 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008674 0 3 0 0 1 0 2 0 1 1 1 0 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 4 4 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00075 Cme_Chr01 FPKM 5.809104 8.592425 8.690439 9.053396 6.730082 5.672706 7.497736 16.47299 15.799006 16.149467