Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00076 ATGGCTTTACACTCGAACAAACACACGACTCAACGCCTCCATAACTCTCTCTTCTTCTTCGATTTACTCCATTGCACTGAACACCAACATCATCATACTGAGCTTCCCATTTTTCTTAACAATGGCGCTACCAACAACTTCCCCCTTTCCCATTTCCTCATTTCCGAAGACGAAGAGCTCGCTTATTTGTTATCCAAAGAAAAAGATCAGAATCTCCAAACCCATGCTGTTTTGGAAACCTTGATTCAAACTGATAATGCTCTGTCTCTCGCTAGAACAGAGGCCATCGACTGGTTGCTTAAAGTTAATGCCTTTTATGGCTTCTCATCTCTTACAGCTCTTTTAGCTATTAATTACCTTGATAGAATCCTCTCTGGACCCCATTTTCAAAGAGATAAGCCATGGATGCTTCAGCTTCTTGCTGTAACTTGCATCTCTCTAGCTGCTAAAATCGAAGAAATTCGTGTCCCTCTTCTTCTAGATCTCCAGGTGGAAGATTCAAAGTACATTTTTGAACCGAAAACGATACAGAGAATGGAGCTTTTGGTTCTTACTGCTCTGCAATGGAAGATGCATCCAGTGACTCCTGTTTCGTTTCTTGGTATCATAACAAAAGGGTTTGAAATGAAGAATCAATACATTCAAAGAGAGTTTCTTAGACGTTGCGAGCGTGTTCTTCTCTCTATCGTCTCAGATTCGAGATCAGTGGGGATTCTTCCTTCCGTAATGGCAGTTTCAGTAATGGTTAGTGTTGTTGAAGAGATGGGAAACTGTCCTCCCTTAGAGGAGTTTCAAGATCACCTTCTTAATGCCCTCAAAATAAACAAGGGGAGAGTGAAGGAGTGTTGTAAAGTGATAATGGAGGCAAAAGCAAAAGGTTCAATGAAGAGGAAGCATGTGGAAGAGAAAGCAGAAACAGAAGAATCATCAGAAGCAGAAACAGATCAGGAAGAAGAAGAAGCAGAAGCAGAAGTAGGGAGTCCAAATGGAGTAATGGAGGCAAATTTCAGCAGTGAAAGCTCCAACGATTCGTGGGATATGGGGACGATTGTGTCAGCATCAACATTATATTCACATTTTTCTTCTTCTTCTTCTTCTTCTTCTAATTCTTCCAAAAGAATCAGACCCACTCGATGA 1137 41.16 MALHSNKHTTQRLHNSLFFFDLLHCTEHQHHHTELPIFLNNGATNNFPLSHFLISEDEELAYLLSKEKDQNLQTHAVLETLIQTDNALSLARTEAIDWLLKVNAFYGFSSLTALLAINYLDRILSGPHFQRDKPWMLQLLAVTCISLAAKIEEIRVPLLLDLQVEDSKYIFEPKTIQRMELLVLTALQWKMHPVTPVSFLGIITKGFEMKNQYIQREFLRRCERVLLSIVSDSRSVGILPSVMAVSVMVSVVEEMGNCPPLEEFQDHLLNALKINKGRVKECCKVIMEAKAKGSMKRKHVEEKAETEESSEAETDQEEEEAEAEVGSPNGVMEANFSSESSNDSWDMGTIVSASTLYSHFSSSSSSSSNSSKRIRPTR 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 541452 543924 + MELO3C018476.2.1 Cme01g00076 317052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00076 378 MobiDBLite consensus disorder prediction 294 345 - -
Cme01g00076 378 CDD CYCLIN 92 184 IPR013763 -
Cme01g00076 378 MobiDBLite consensus disorder prediction 307 324 - -
Cme01g00076 378 Pfam Cyclin, N-terminal domain 61 191 IPR006671 -
Cme01g00076 378 PANTHER CYCLIN-D3-1 33 357 - -
Cme01g00076 378 Coils Coil 300 324 - -
Cme01g00076 378 SMART cyclin_7 97 185 IPR013763 -
Cme01g00076 378 MobiDBLite consensus disorder prediction 331 345 - -
Cme01g00076 378 PANTHER CYCLINS 33 357 IPR039361 -
Cme01g00076 378 MobiDBLite consensus disorder prediction 358 378 - -
Cme01g00076 378 Pfam Cyclin, C-terminal domain 194 311 IPR004367 -
Cme01g00076 378 Gene3D - 73 192 - -
Cme01g00076 378 SUPERFAMILY Cyclin-like 54 192 IPR036915 -
Cme01g00076 378 SMART Cyclin_C_2 194 310 IPR004367 -
Cme01g00076 378 ProSitePatterns Cyclins signature. 92 123 IPR006671 -
Cme01g00076 378 Gene3D - 62 284 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00076 K14505 CYCD3; cyclin D3, plant - csv:101222066 620.157
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00076 Cme-Chr1:541452 Cme08g00737 Cme-Chr8:4915013 8.55E-47 dispersed
Cme08g00645 Cme-Chr8:4225298 Cme01g00076 Cme-Chr1:541452 2.66E-26 dispersed
Cme08g02423 Cme-Chr8:31082423 Cme01g00076 Cme-Chr1:541452 1.46E-22 transposed
Cme01g00076 Cme-Chr1:541452 Cme03g02070 Cme-Chr3:28174784 1.29E-75 wgd
Cme01g00076 Cme-Chr1:541452 Cme06g01365 Cme-Chr6:11818085 1.73E-86 wgd
Cme01g00076 Cme-Chr1:541452 Cme07g00321 Cme-Chr7:2043673 3.10E-65 wgd
Cme01g00076 Cme-Chr1:541452 Cme08g00596 Cme-Chr8:3802829 5.66E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g609 Blo02g00838 . . Bda08g00772 . . Bma05g00508 . Cmo19g00602 Cmo11g01386 . . . . . Cpe04g00298 Cpe15g00473 . . . . . . . Cla02g00627 Cam02g0660 Cec02g0664 Cco02g0687 Clacu02g0668 Cmu02g0662 Cre02g0981 . Cone8ag1114 . . Lsi03g00524 Csa07g00732 . Cme01g00076 . . Bda15g00846 Bda14g01452 . . Bma03g01357 . . Cmo04g00511 Cmo16g00370 Cma11g01728 Cma19g00585 Car11g01112 . Cpe14g00286 Cpe01g00427 . . . . . . . . . . . . . . . . Chy01g00082 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012026 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 3 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00076 Cme_Chr01 FPKM 43.321507 45.831402 68.4543 68.352318 65.400047 66.59024 69.9748 92.025078 95.565285 93.618324