Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00078 ATGAATCTCCGCTCATCTTTTCTCCTCTTCCTTTTGTTCCAGGGTCTCCTCCTTCCCGCCGCTTCTTCCACTTCAGCCTACCCTTCCGTTGTCGATACCGGACCAACTGATTGCTCACTTTCCGACGACGGCCTCACTCCTATTCGCCGGGAGGTGTACGATAATGGAAGAATCATCGACATCAGTCATCGGTTCACTACAGATATGCCGGCTTGGGAATCTGACCAAGGCCTTGGCCAGTTCCTCTGGCTTCCTAAGAGCATGAAGAATGGCTCGCTTGCTAACAATTCTGAAATGAAGCTTCCGGCTCACACTGGTACCCACGTCGATGCACCTGGTCATGTTTTTGATCACTACTTCGACGCTGGTTTCGATGTTGATACACTCGATCTGGAAGTTCTTAATGGTCCTGGACTGTTGGTGGACGTTCCAAGAGATAAGAACATTACTGCTGAGGTGATGAAGTCTTTAAATATTCCCAAAGGAGTTCGTCGTGTACTCTTCAGAACATTAAATACAGACAGACGTCTCATGTGGAAAAAGGAGTTTGACACAAGTTATGTAGGATTTATGAAAGATGGGGCAAAATGGCTTGTAGAGAACACTGATATCAAACTAGTTGGAATTGACTACTTATCAGTTGCTGCATTTCAAGATCTTATTCCATCTCATCTTGAATTTTTAAGAGGCAGGGAAACCATTCTCGTCGAAGGTTTAAAGCTTGATGGCGTCCAGCCGGGTTTATATTCAATCCATTGCTTACCTCTTAGGTTGCTTGGTGCCGAGGGGTCACCTATCAGATGCATTCTAATTAAGTAG 819 45.42 MNLRSSFLLFLLFQGLLLPAASSTSAYPSVVDTGPTDCSLSDDGLTPIRREVYDNGRIIDISHRFTTDMPAWESDQGLGQFLWLPKSMKNGSLANNSEMKLPAHTGTHVDAPGHVFDHYFDAGFDVDTLDLEVLNGPGLLVDVPRDKNITAEVMKSLNIPKGVRRVLFRTLNTDRRLMWKKEFDTSYVGFMKDGAKWLVENTDIKLVGIDYLSVAAFQDLIPSHLEFLRGRETILVEGLKLDGVQPGLYSIHCLPLRLLGAEGSPIRCILIK 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 560716 563539 - MELO3C018478.2.1 Cme01g00078 317054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00078 272 PANTHER CYCLASE-LIKE PROTEIN 2 8 272 IPR007325 GO:0004061|GO:0019441
Cme01g00078 272 SUPERFAMILY Putative cyclase 56 271 IPR037175 GO:0004061|GO:0019441
Cme01g00078 272 Pfam Putative cyclase 59 214 IPR007325 GO:0004061|GO:0019441
Cme01g00078 272 Gene3D Putative cyclase 52 271 IPR037175 GO:0004061|GO:0019441
Cme01g00078 272 PANTHER KYNURENINE FORMAMIDASE-LIKE ISOFORM X1 8 272 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00078 - - - csv:101221830 507.679
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00078 Cme-Chr1:560716 Cme01g00079 Cme-Chr1:563982 1.40E-135 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g612 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1112 . . . Csa07g00730 . Cme01g00078 . . . Bda14g01455 . . Bma03g01368 . . . . Cma11g01727 . . . . . . . . . . . . . . . . . . . . . Chy01g00084 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002722 3 2 2 2 2 2 1 2 2 2 1 2 0 2 2 1 2 2 1 2 2 2 2 2 2 1 2 3 4 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00078 Cme_Chr01 FPKM 33.977329 36.275433 63.520329 62.478889 45.137493 42.674255 45.544514 62.836647 66.292274 60.715336