Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00082 ATATTGATAGAGAGGAGGACACGTGGCAGAGTGGCTTTCCTCAAATTGCAAAATGTGGAAGAAAACGGTCGTCGTCAGCCAGTGGTATTCGTGTATTTGGCTTATTGGGGAAGAAGGGATAAGGAGGGAGCTTCAATAAACAGTTTTCCGGCGCCAATCGAGCTCATCCTCAGATGGCCGTTCTTCATGCTTCCGCTTCTCTCTCCCTCGCCATACGCGATGCTTCCTTCGCAAGAACCGCACCAAAAGCTTTTCCACTTCATAGAAGTCTCCTACCGAATTTATATCGAGTTGGAACCACTGTTAAGCAAGCCAATTGGTCAAAAGAAGCATGCAGTGAAACAAAATTCTGTTTCTATAAGATGTGAGCAAAGTACCCAACAGAGCAATCTGGATGTTTGGCTTGGGCGGTTTGCAATGGTAGGATTTGCAATTGCAATTAGTGTTGAAATTGCAACAGGCAAGGGACTTTTAGAGAACCTTGGAGTTACGTCTCCCCTGCCTAGTGTGGCCTTGGCCGTTACTGCATTGGTTGGCGTACTGACTGCAATTTCCTGTATTGAACAGACCATCATCATTATTGTGCATAATATTGTATATTCGTGTTCCGAGCTACTTGGAGGAGACCCTTTGTTGGGCTTACTCTCTCCTGCAGAACTAAGAGCTGGTGGTGCTGGATTGAAAATTTTGTCATCTTCTTTATATTCCTTGATTTCGGACATGGGTGCAGTGATATCTAGGTTGAGGAAGAGACTTCTTCAGAACCGTGAAGTGAGAATCCTGATGCTCGGTCTTGATGCGTCGGGGAAGACAACCATTTTGTACAAACTAAAACTTGGTGAAATAGTTATGACCGTGCCAACTATTGGGTTCAATGTGGAAACAGTAGAATACAAAAATATGAGCTGCAGTGTCTGGGATGTTGGAGGACAAGATAAGGTTTGA 945 44.44 ILIERRTRGRVAFLKLQNVEENGRRQPVVFVYLAYWGRRDKEGASINSFPAPIELILRWPFFMLPLLSPSPYAMLPSQEPHQKLFHFIEVSYRIYIELEPLLSKPIGQKKHAVKQNSVSIRCEQSTQQSNLDVWLGRFAMVGFAIAISVEIATGKGLLENLGVTSPLPSVALAVTALVGVLTAISCIEQTIIIIVHNIVYSCSELLGGDPLLGLLSPAELRAGGAGLKILSSSLYSLISDMGAVISRLRKRLLQNREVRILMLGLDASGKTTILYKLKLGEIVMTVPTIGFNVETVEYKNMSCSVWDVGGQDKV 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 578750 581977 - MELO3C018482.2.1 Cme01g00082 317058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00082 314 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 91 185 - -
Cme01g00082 314 SMART arf_sub_2 241 314 - -
Cme01g00082 314 SUPERFAMILY Chlorophyll a-b binding protein 132 176 - -
Cme01g00082 314 Pfam ADP-ribosylation factor family 248 314 IPR006689 GO:0003924|GO:0005525
Cme01g00082 314 PANTHER STRESS ENHANCED PROTEIN 1, CHLOROPLASTIC 91 185 - -
Cme01g00082 314 Gene3D - 236 314 IPR027417 -
Cme01g00082 314 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 313 IPR027417 -
Cme01g00082 314 PRINTS GTP-binding SAR1 protein signature 259 282 IPR006689 GO:0003924|GO:0005525
Cme01g00082 314 PRINTS GTP-binding SAR1 protein signature 287 311 IPR006689 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00082 K07937 ARF1_2; ADP-ribosylation factor 1/2 - mnt:21410084 210.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00082 Cme-Chr1:578750 Cme04g01875 Cme-Chr4:26462391 2.26E-32 dispersed
Cme01g00082 Cme-Chr1:578750 Cme08g00598 Cme-Chr8:3805980 1.89E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g616 . . . Bda08g00771 . . . . Cmo19g00598 Cmo11g01390 . . . . . Cpe04g00302 Cpe15g00470 . . . . . . . Cla02g00632 . Cec02g0671 Cco02g0695 . . Cre02g0988 . Cone8ag1110 . . Lsi03g00528 Csa07g00726 . Cme01g00082 . . . . . . . . . . . Cma11g01725 Cma19g00582 Car11g01116 Car19g00444 . . . . . . . . . . . . . . . . . . Chy01g00087 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011017 4 0 1 1 2 0 2 0 0 1 1 0 2 1 1 2 0 1 2 0 1 1 0 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00082 Cme_Chr01 FPKM 9.074059 9.979017 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0