Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00089 ATGGCTTCTAAACAATCTCCTTCACATGTCTTCCTTGTATGCTATCCCGGCCAAGGACACATCAATCCCACTCTAAGACTAGCCAAGAAACTCGCCGCTGAGGGTCTTCTTGTCACCCTTTGCACAGCCGCGCATTTTGGCCAAACACTGCAGAAAGCCGGAAGTATTCTCGGCGGCGACCAATGCACTCCCGTCGGTAATGGCTTCATCAGATTTCAATTTTTCGAAGATGGGATCGTAGAGATTAATCCCAAAGATATGAACTTGGACCGCTTCGTTGCCCAGCTCGAGCTATCTGGCCGGCCGTCGCTTGTCGACCTGATAAAGAAGCAAACCGCCGAAAACCGTCCGGTTTCTTGTATGATCTTGAACCCTTTTTTTCCATGGACTTATGATGTTGCAGAGGAGCTTCAAATCCCCTTTGCTGTTCTTTGGGTTCAATCTTGTGCTGTGTTCTCGATTTATTGTCATTACTTCCACAAATCCGTCCCGTTTCCTACTGAAATTGACCCCACAATCGATGTTCAGCTCCCGATATTGCCACTTTTGAAGAACGATGAAATCCCAAGCTTCTTGCATCCGAAGAAAACCTATGGCGTTCTGGGAAAAGCTATGTTATCCCAATTCGGTAAACTATCGCCAGCCTTTTGTGTTTTGATTGATACTTTTGAAGAACTCGAAAAGGAAATCATTAATTACATGTCAAAAATCATTCCCTTGAAACCCATAGGTCCATTGTTCTTAAACTCCCAAAAATTAGAAATAGAGGTCTCTGTTGACTGTCTAAAAGCAGAAGATTGCATGGATTGGCTAAACTCAAAGCCCCCACAATCCGTCGTCTACGTTTCATTCGGAAGCGTCGTGTTCTTGAAACAAGAACAAATTGACGAGATCGCTTATGGGCTTTGCAATTCAGGATTCTCATTTTTATGGGTTCTGAAACCGCCGTCTGAATTTTTTGGGAAACAACGCCAAACTTTGCCGGAAGAGGTTGTGGAAAAAATAGGGGAGAGGGGGAAAATAGTGCAATGGAGCTCGCAAGAACGGGTTTTGTCGCACGAATCAATCGGGTGTTTTGTGACGCACTGTGGGTGGAATTCGTCGGTGGAAGCCATTGCCAACGGCGTTCCGGTGGTGGCGTTCCCGCAGTGGGGGGATCAAGTGACCAACGCCAAGTTTTTGGTGGAGGAGTATGGAGTTGGAGTGAGTCTGTCGCGTGGAGTAGAGGTAAATGAGTTGGTTACGAGGGATGAGATTGAGAGGTGCTTGTCGGACGTCATGACCGGCGGCAGTGGAGAGAATGTATTCAGGCAAAATGCTTTGAAATGGAAGAAGGCCGCGGCGGCTGCGGTGGCGGACGGCGGCTCCTCCACCCGAAACTTCCAAGATTTTGTTGATAAGATTAGACAGATATGA 1416 47.03 MASKQSPSHVFLVCYPGQGHINPTLRLAKKLAAEGLLVTLCTAAHFGQTLQKAGSILGGDQCTPVGNGFIRFQFFEDGIVEINPKDMNLDRFVAQLELSGRPSLVDLIKKQTAENRPVSCMILNPFFPWTYDVAEELQIPFAVLWVQSCAVFSIYCHYFHKSVPFPTEIDPTIDVQLPILPLLKNDEIPSFLHPKKTYGVLGKAMLSQFGKLSPAFCVLIDTFEELEKEIINYMSKIIPLKPIGPLFLNSQKLEIEVSVDCLKAEDCMDWLNSKPPQSVVYVSFGSVVFLKQEQIDEIAYGLCNSGFSFLWVLKPPSEFFGKQRQTLPEEVVEKIGERGKIVQWSSQERVLSHESIGCFVTHCGWNSSVEAIANGVPVVAFPQWGDQVTNAKFLVEEYGVGVSLSRGVEVNELVTRDEIERCLSDVMTGGSGENVFRQNALKWKKAAAAAVADGGSSTRNFQDFVDKIRQI 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 601274 602721 - MELO3C018489.2.1 Cme01g00089 317065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00089 471 ProSitePatterns UDP-glycosyltransferases signature. 344 387 IPR035595 -
Cme01g00089 471 PANTHER UDP-GLYCOSYLTRANSFERASE 84A1 7 470 - -
Cme01g00089 471 Gene3D Glycogen Phosphorylase B; 256 449 - -
Cme01g00089 471 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 7 470 - -
Cme01g00089 471 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 265 436 IPR002213 GO:0008194
Cme01g00089 471 Gene3D Glycogen Phosphorylase B; 13 461 - -
Cme01g00089 471 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 8 469 - -
Cme01g00089 471 CDD GT1_Gtf-like 9 435 IPR002213 GO:0008194
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00089 - - K23279 csv:101215819 868.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00089 Cme-Chr1:601274 Cme11g00720 Cme-Chr11:8664735 4.16E-104 dispersed
Cme01g00088 Cme-Chr1:594978 Cme01g00089 Cme-Chr1:601274 0 tandem
Cme01g00089 Cme-Chr1:601274 Cme01g00090 Cme-Chr1:614227 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g633 . . . . . . Bma05g00532 . Cmo19g00593 Cmo11g01394 . . . . . . Cpe15g00465 Bhi05g01106 . . . . . . Cla02g00640 . . . . . . . . . . Lsi03g00535 Csa07g00718 . Cme01g00089 . . . . . . . . . . . Cma11g01721 Cma19g00578 Car11g01120 Car19g00438 . . . . . . . . . . . . . . . . . . Chy01g00097 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000463 3 5 1 1 1 4 5 5 5 4 5 5 4 3 3 5 5 4 4 5 4 3 4 5 5 5 3 5 4 3 118
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00089 Cme_Chr01 FPKM 13.723402 15.537013 11.876639 14.416289 11.378431 13.31091 11.948732 18.852743 19.854748 20.35191