Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00092 ATGGGTAGCGTTGAAAGAGAAAGAAGAACAACCACAGGCTTTGCTGCAAGAGACCCATCTGGGTTTCTCTCTCCTTACACTTACGAACTCAGAGAAACTGGGCCAGAAGATGTTTACATAAGAGTTATATGCTGTGGGCTTTGTCATACTGATGTTCATCAAATCAAAAACGATCTTGGAATGTCCAATTACCCCATGGTTCCAGGGCATGAAGTGGTTGGTGAAGTGATGGAAGTTGGGGAGAATGTGAAGAGATTTAAAGTGAAGGATATTGTGGGAGTTGGATGCATAGTTGGCTCTTGTAAAACTTGTGAGAGATGTGAAACTGATAGGGAACAATATTGCAATAACAAGATTTGGACTAATAATGATGTCTATACCGACGGCCGGCCTACGCAAGGCGGGTTCGCCGCCGCCATGGTCGTCGACCAAAGGTTTGTGGTGAAAGTACCGGAAGGAATGGCACCGGAGCAGGCAGCGGGGCTGCTATGCGCGGGGGTGACGGTGTACAGTCCTCTGAACCATTTTGGGCTAAATAAAAGTGGGCTAAGAGGAGGGATCTTAGGGCTCGGAGGAATTGGGCACATGGGGGTGAAATTGGCAAAGGCATTGGGTCATCACGTCACAGTCATAAGCTCCTCCAACAAGAAGAGGGAAGAAGCTCTAGACCATCTCGGCGCCGACGACTACCTCGTCAGCTCCGACGAAGCTCGGATGAAACAGGCCGTCGACTCTCTTGACTACATCATCGACACCGTCCCAGCCTTTCACAATATCGAGCTTTATCTTTCGTTGCTCAAGCTCGACGGCAAGTTGATCTTGTTGGGCGTTATTAATAACCCTCTCCAATTCGTCTCTCCCATGGTCATCCTTGGGAGGAGGACGATCACGGGGAGTTTCATCGGGAGCATGAAGGAAACACAAGAGATTCTTGAATTCTTTGAAGAGAAAGAATTGAGTACGATGGTGGAAGTGGTGAAGATGGATTACATAAACAAAGCCATTGAAAGGTTGGAGAAGAATGATGTTAGATATAGGTTTGTGGTGGATGTTGAAGGAAGCAAGTTTTAA 1071 47.25 MGSVERERRTTTGFAARDPSGFLSPYTYELRETGPEDVYIRVICCGLCHTDVHQIKNDLGMSNYPMVPGHEVVGEVMEVGENVKRFKVKDIVGVGCIVGSCKTCERCETDREQYCNNKIWTNNDVYTDGRPTQGGFAAAMVVDQRFVVKVPEGMAPEQAAGLLCAGVTVYSPLNHFGLNKSGLRGGILGLGGIGHMGVKLAKALGHHVTVISSSNKKREEALDHLGADDYLVSSDEARMKQAVDSLDYIIDTVPAFHNIELYLSLLKLDGKLILLGVINNPLQFVSPMVILGRRTITGSFIGSMKETQEILEFFEEKELSTMVEVVKMDYINKAIERLEKNDVRYRFVVDVEGSKF 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 632059 634400 + MELO3C018492.2.1 Cme01g00092 317068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00092 356 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 7 355 - -
Cme01g00092 356 SMART PKS_ER_names_mod 21 349 IPR020843 GO:0016491
Cme01g00092 356 Pfam Alcohol dehydrogenase GroES-like domain 36 150 IPR013154 -
Cme01g00092 356 Pfam Zinc-binding dehydrogenase 192 315 IPR013149 -
Cme01g00092 356 PANTHER ALDEHYDE REDUCTASE 7 355 - -
Cme01g00092 356 SUPERFAMILY GroES-like 17 182 IPR011032 -
Cme01g00092 356 CDD CAD1 12 350 - -
Cme01g00092 356 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Cme01g00092 356 Gene3D - 165 321 - -
Cme01g00092 356 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 319 IPR036291 -
Cme01g00092 356 Gene3D - 14 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00092 Cme-Chr1:632059 Cme08g00714 Cme-Chr8:4754121 7.36E-120 dispersed
Cme01g00092 Cme-Chr1:632059 Cme06g01378 Cme-Chr6:12016238 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00092 K00083 - csv:101214622 656.751