Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00108 ATGATGTTGAGGTCGTGTTTCCGGCCGCTCGAGCGGTTTCTTGGCCGGTGGAGCGGTGATGGATTGCTCTGGCACTCGGAATTGAAGCCTCATGCCTCTGGTGATTACTCGATCGCTGTTGTTCAGGCTAATTCTTGTCTTGAGGATCAGAGTCAGGTTTTCACGTCTCCTTCTGCTACTTATGTTGGTGTTTACGATGGTCATGGCGGGCCTGAGGCTTCTCGTTTTGTGAATAAGCATCTTTTTCCTTATATGCATAAGTTTGCTTCAGAACAAGGTGGACTATCGGAGGATGTTATTAAGAAGGCGTTCAATGCTACAGAAGAGGAGTTTTTGCGTTTGGTTAAACGGGCATTGCCTGCAAAGCCGCAGATTGCTTCAGTCGGATCATGCTGTCTTGTAGGTGCAATTTCAAATACAAAGTTGTACGTTGCAAATCTAGGTGATTCGAGAGCCGTGCTTGGCCGTAGAGGTTCGGGCAATAAGATAACACCGGTAGTTGCAGAACGATTGTCTACTGATCACAACGTTGGCGTTGATGAAGTTAGGAAAGAAGTTATAGCACTTCATCCCGATGATTCTCATATAGTTGTCTATACCCGTGGAGTATGGAGAATAAAAGGCATAATTCAGGTTTCAAGATCTATTGGCGACGTTTATTTAAAGAAACCTGAGTTCAACCGGGATCCAATATTCCAACAATTTGGGAACCCCGTTCCTTTAAAACGACCTGTAATGACTGCAGAACCATCAATCCTAACACGAGAGCTTAAACCCCAAGACTTATTCCTCATCTTTGCATCAGATGGCCTATGGGAACAACTAACCGATGAAGCAGCAGTGGAAATAGTTTTCAAGAACCCTAGAGCTGGGATTGCAAAGAGATTAGTCAGTGCTGCCCTCCACGAGGCAGCGAAGAAGCGGGAAATGAGATACTCTGACTTAAAGAAGATCGAAAAGGGGATTCGACGTCATTTCCACGATGACATCACTGTCGTCGTCGTGTATCTCGACCACAACAGAAGCTCAAACACCAATCGAACAAAGAACACTGTTGCCGGGTACACTAGTGCACCTGTTGACATATTTTCTCTTAACTCAAACTATGAAGGTGAGGAAGAAACTTCAGACAATGTTTTGAAAAACTGA 1149 44.73 MMLRSCFRPLERFLGRWSGDGLLWHSELKPHASGDYSIAVVQANSCLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNKHLFPYMHKFASEQGGLSEDVIKKAFNATEEEFLRLVKRALPAKPQIASVGSCCLVGAISNTKLYVANLGDSRAVLGRRGSGNKITPVVAERLSTDHNVGVDEVRKEVIALHPDDSHIVVYTRGVWRIKGIIQVSRSIGDVYLKKPEFNRDPIFQQFGNPVPLKRPVMTAEPSILTRELKPQDLFLIFASDGLWEQLTDEAAVEIVFKNPRAGIAKRLVSAALHEAAKKREMRYSDLKKIEKGIRRHFHDDITVVVVYLDHNRSSNTNRTKNTVAGYTSAPVDIFSLNSNYEGEEETSDNVLKN 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 745087 747635 - MELO3C018507.2.1 Cme01g00108 317084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00108 382 CDD PP2Cc 42 337 IPR001932 -
Cme01g00108 382 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 4 372 - -
Cme01g00108 382 PANTHER ALPHABET, ISOFORM E-RELATED 4 372 - -
Cme01g00108 382 Pfam Protein phosphatase 2C 56 308 IPR001932 -
Cme01g00108 382 ProSiteProfiles PPM-type phosphatase domain profile. 35 337 IPR001932 -
Cme01g00108 382 Gene3D - 25 349 IPR036457 -
Cme01g00108 382 SMART PP2C_4 25 335 IPR001932 -
Cme01g00108 382 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169
Cme01g00108 382 SUPERFAMILY PP2C-like 42 338 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00108 Cme-Chr1:745087 Cme04g02241 Cme-Chr4:29542684 3.04E-150 dispersed
Cme01g00108 Cme-Chr1:745087 Cme11g00367 Cme-Chr11:3727600 1.56E-144 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00108 - K01102 csv:101216862 742.651