Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00116 ATGGCGACTTCTTCACTCTTCCATCTTTCTGCTCCACCGTCGTTAGCCATCGACAGCTCAAAGTCGTCTTTCCTCTGTGGTACTCAGCTGCCTTTACCTTCCTCTCGTTTGAGAACTTCATGTCGCAGATATGTCCTATCTCCCTCCGCCCAACAATCCATGGACCACATTCCTAAGCAGTTTAGAGGAGAAAATCTCAAAGATGGATTGATTGAGAACTACAAGAATGCTCCTAAATATCTTTATGGCCTTACACCTTCACAAATGGACATGTTCATGACAGAAGATAATCCTGTGCGGCGACAGTCAGAATTAGTTACTGAGCAAAACATATCATCTTCCTACAACTACTTGAATCATGGAGGAATGTGGAGTCTAACTGGCATGGATGGGAAGGGTCCCGCGAAATATAGTATGAGCGTTAGCATGTATCGTGGGGGAGGAAGAGCAGCTGGACGACCTCGAAATGCTCCTCCTGATTTGCCCTCTTTGCTCTTAGATGCTCGTATAGTCTATTTGGGCATGCCTATTGTACCGGCAGTGACTGAGCTTCTTGTTGCTCAGTTTATGTGGCTTGATTATGACAACCCTTCGAAGCCCATATATCTCTACATAAACTCTCCTGGGACTCAGAATGAGAAGATGGAGACGGTTGGATCTGAAACTGAAGCATATGCTCTTGGAGATATGATGTCTTACTGCAAATCGGATGTTTATACCGTTAACGTTGGGATGGCATTCGGTCAAGCGGCAATGCTTTTGTCACTTGGAACCAAGGGTTACCGTGCTCTCCAGCCTAACTCTTCCACTAAACTATATCTGCCTAAAGTAAATAGATCAAGTGGGACGGTTATAGATATGTGGATTAAGGCTAAAGAACTCGATGCCAACACCGAGTACTATCTCGAGCTACTAGCTAAAGGAATTGGTAAGCCCAAGGAAGAGATTACTAAAGATATCCAACGATCCAAATACTTCCAAGCACAAGAAGCTATTGACTACGGCATTGCAGACAAGATTATCACCTCTCAAGATTCCGCCTTTGAAAAAAGGAATTACGACGAGATGCTTGCACAGTCAAAAGCTGCGAGGAGAGGAGCAGGAGGCAATCCACAAGCGGCGCCAACTGGGTTCAGATAA 1140 45.0 MATSSLFHLSAPPSLAIDSSKSSFLCGTQLPLPSSRLRTSCRRYVLSPSAQQSMDHIPKQFRGENLKDGLIENYKNAPKYLYGLTPSQMDMFMTEDNPVRRQSELVTEQNISSSYNYLNHGGMWSLTGMDGKGPAKYSMSVSMYRGGGRAAGRPRNAPPDLPSLLLDARIVYLGMPIVPAVTELLVAQFMWLDYDNPSKPIYLYINSPGTQNEKMETVGSETEAYALGDMMSYCKSDVYTVNVGMAFGQAAMLLSLGTKGYRALQPNSSTKLYLPKVNRSSGTVIDMWIKAKELDANTEYYLELLAKGIGKPKEEITKDIQRSKYFQAQEAIDYGIADKIITSQDSAFEKRNYDEMLAQSKAARRGAGGNPQAAPTGFR 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 803321 807581 + MELO3C018514.2.1 Cme01g00116 317092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00116 379 Gene3D - 149 348 - -
Cme01g00116 379 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 46 371 IPR023562 -
Cme01g00116 379 PRINTS Clp protease catalytic subunit P signature 160 175 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cme01g00116 379 PRINTS Clp protease catalytic subunit P signature 200 220 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cme01g00116 379 PRINTS Clp protease catalytic subunit P signature 240 257 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cme01g00116 379 PRINTS Clp protease catalytic subunit P signature 319 338 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cme01g00116 379 CDD S14_ClpP_2 160 340 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cme01g00116 379 MobiDBLite consensus disorder prediction 359 379 - -
Cme01g00116 379 SUPERFAMILY ClpP/crotonase 157 345 IPR029045 -
Cme01g00116 379 Pfam Clp protease 162 343 IPR023562 -
Cme01g00116 379 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 1, CHLOROPLASTIC 46 371 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00116 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - csv:101216144 629.017
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00116 Cme-Chr1:803321 Cme05g01600 Cme-Chr5:25155342 1.14E-42 dispersed
Cme01g00116 Cme-Chr1:803321 Cme09g01674 Cme-Chr9:21426760 2.55E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g695 Blo02g00932 . . Bda08g00678 . . Bma05g00652 . . Cmo11g01416 . . . . . Cpe04g00324 . . . . . . . . . . . . . . . . . . . . Csa07g00689 . Cme01g00116 . . . . . Bpe05g00474 . . . . . Cma11g01702 . Car11g01140 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011358 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00116 Cme_Chr01 FPKM 9.65544 9.963782 7.709025 7.414562 5.625417 5.235587 7.939139 7.909628 8.151263 8.362009