Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme01g00118 | ATGGAGCAACTCAATGGAAGTTTCATAGCTAATCATGAAGAAGAAGATCATGAAGAAGAAGAAGAAGCAACTTTCATGGCTCAATTACTCTTCAACACCAAAGCTAATTCCCCACCTGACCCTTTCATGGCTACCCTTTCTTATGATCAAACACCTTCTTCTTCAACCTTTTATAGCCTTTCACAAGAGAGTAGTGATGAATTATTATTCCCAACTAATGAAAATAATAATAATCATCATCATCATTATTATTATTGCAATCCAATGAATAATAATAATGATAACAGTAGTAATTATTTTTCATTGGGAGAGCTTGGGAATTATTACAATAACAATAATGGGAGCAATTTCCATCTTCAAGTTCCTGAGGACTCCATGAACGTAGAGGTGAGTGAGAATAATAGTTTGCAGCCTTGTTTTGAAGAAGCTGATCAGTTGATAAAATTACCTGAAGAAGAAGCTGCTCATTATCAAACTGAGATTAATTGCAAGAAAAGATCAAGAGGAGAATTTGGGGATCATCATGTACAAAAGGGAAGGAATGAGAGGGGAAAGAAAACTCAAAAGCTTACCTCAAGCACCAACACTGAAGAAGATGGCAATGGTGGCCTTAGCAGGCAAAGCACAAGCACCTACTGCTCGGAAGACGAATCCAACGCCTCTCTCGATCGAAACGGTGGAGCTAATTATAACTCGGGGTCAAGTCTGAATGGGCCGAACAAATCCCGAGCCAGCAGAGGTTCAGCCACAGATCCTCAGAGCCTTTATGCAAGAAAAAGAAGAGAAAGAATCAATGAGAGGTTGAGAATCTTACAGAATCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTCCAAATCAAGCTACTAAGCTCTGATGATTTATGGATGTATGCTCCGATTGCTTACAACGGAATGGATATCGGACTTAATCCGACAACCCCAAAAACAGCAAAAGAGAAAGAATTATGA | 1014 | 38.86 | MEQLNGSFIANHEEEDHEEEEEATFMAQLLFNTKANSPPDPFMATLSYDQTPSSSTFYSLSQESSDELLFPTNENNNNHHHHYYYCNPMNNNNDNSSNYFSLGELGNYYNNNNGSNFHLQVPEDSMNVEVSENNSLQPCFEEADQLIKLPEEEAAHYQTEINCKKRSRGEFGDHHVQKGRNERGKKTQKLTSSTNTEEDGNGGLSRQSTSTYCSEDESNASLDRNGGANYNSGSSLNGPNKSRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNPTTPKTAKEKEL | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 844087 | 846594 | + | MELO3C018516.2.1 | Cme01g00118 | 317094 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme01g00118 | 337 | PANTHER | TRANSCRIPTION FACTOR BHLH139-LIKE | 30 | 325 | - | - | |
Cme01g00118 | 337 | MobiDBLite | consensus disorder prediction | 166 | 187 | - | - | |
Cme01g00118 | 337 | Pfam | Helix-loop-helix DNA-binding domain | 258 | 298 | IPR011598 | GO:0046983 | |
Cme01g00118 | 337 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cme01g00118 | 337 | Gene3D | - | 246 | 305 | IPR036638 | GO:0046983 | |
Cme01g00118 | 337 | CDD | bHLH_AtIND_like | 249 | 311 | - | - | |
Cme01g00118 | 337 | SMART | finulus | 254 | 303 | IPR011598 | GO:0046983 | |
Cme01g00118 | 337 | MobiDBLite | consensus disorder prediction | 166 | 260 | - | - | |
Cme01g00118 | 337 | MobiDBLite | consensus disorder prediction | 188 | 252 | - | - | |
Cme01g00118 | 337 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 248 | 297 | IPR011598 | GO:0046983 | |
Cme01g00118 | 337 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 30 | 325 | - | - | |
Cme01g00118 | 337 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 248 | 313 | IPR036638 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme01g00118 | Cme07g02178 | CCT | |
Cme01g00118 | Cme07g02178 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g00118 | Cme-Chr1:844087 | Cme02g01076 | Cme-Chr2:15788112 | 9.26E-21 | dispersed | |
Cme11g00295 | Cme-Chr11:3162208 | Cme01g00118 | Cme-Chr1:844087 | 2.96E-17 | dispersed | |
Cme01g00397 | Cme-Chr1:2849024 | Cme01g00118 | Cme-Chr1:844087 | 1.42E-12 | transposed | |
Cme09g00932 | Cme-Chr9:13028405 | Cme01g00118 | Cme-Chr1:844087 | 2.85E-26 | transposed | |
Cme01g00118 | Cme-Chr1:844087 | Cme03g02098 | Cme-Chr3:28290488 | 3.22E-38 | wgd | |
Cme01g00118 | Cme-Chr1:844087 | Cme07g02178 | Cme-Chr7:26146937 | 5.35E-65 | wgd | |
Cme01g00118 | Cme-Chr1:844087 | Cme07g00293 | Cme-Chr7:1901015 | 2.51E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40685 | PF00010 | HLH | 1.30E-08 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme01g00118 | - | - | cmo:103495305 | 589.341 |