Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00118 ATGGAGCAACTCAATGGAAGTTTCATAGCTAATCATGAAGAAGAAGATCATGAAGAAGAAGAAGAAGCAACTTTCATGGCTCAATTACTCTTCAACACCAAAGCTAATTCCCCACCTGACCCTTTCATGGCTACCCTTTCTTATGATCAAACACCTTCTTCTTCAACCTTTTATAGCCTTTCACAAGAGAGTAGTGATGAATTATTATTCCCAACTAATGAAAATAATAATAATCATCATCATCATTATTATTATTGCAATCCAATGAATAATAATAATGATAACAGTAGTAATTATTTTTCATTGGGAGAGCTTGGGAATTATTACAATAACAATAATGGGAGCAATTTCCATCTTCAAGTTCCTGAGGACTCCATGAACGTAGAGGTGAGTGAGAATAATAGTTTGCAGCCTTGTTTTGAAGAAGCTGATCAGTTGATAAAATTACCTGAAGAAGAAGCTGCTCATTATCAAACTGAGATTAATTGCAAGAAAAGATCAAGAGGAGAATTTGGGGATCATCATGTACAAAAGGGAAGGAATGAGAGGGGAAAGAAAACTCAAAAGCTTACCTCAAGCACCAACACTGAAGAAGATGGCAATGGTGGCCTTAGCAGGCAAAGCACAAGCACCTACTGCTCGGAAGACGAATCCAACGCCTCTCTCGATCGAAACGGTGGAGCTAATTATAACTCGGGGTCAAGTCTGAATGGGCCGAACAAATCCCGAGCCAGCAGAGGTTCAGCCACAGATCCTCAGAGCCTTTATGCAAGAAAAAGAAGAGAAAGAATCAATGAGAGGTTGAGAATCTTACAGAATCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTCCAAATCAAGCTACTAAGCTCTGATGATTTATGGATGTATGCTCCGATTGCTTACAACGGAATGGATATCGGACTTAATCCGACAACCCCAAAAACAGCAAAAGAGAAAGAATTATGA 1014 38.86 MEQLNGSFIANHEEEDHEEEEEATFMAQLLFNTKANSPPDPFMATLSYDQTPSSSTFYSLSQESSDELLFPTNENNNNHHHHYYYCNPMNNNNDNSSNYFSLGELGNYYNNNNGSNFHLQVPEDSMNVEVSENNSLQPCFEEADQLIKLPEEEAAHYQTEINCKKRSRGEFGDHHVQKGRNERGKKTQKLTSSTNTEEDGNGGLSRQSTSTYCSEDESNASLDRNGGANYNSGSSLNGPNKSRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNPTTPKTAKEKEL 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 844087 846594 + MELO3C018516.2.1 Cme01g00118 317094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00118 337 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 30 325 - -
Cme01g00118 337 MobiDBLite consensus disorder prediction 166 187 - -
Cme01g00118 337 Pfam Helix-loop-helix DNA-binding domain 258 298 IPR011598 GO:0046983
Cme01g00118 337 MobiDBLite consensus disorder prediction 1 21 - -
Cme01g00118 337 Gene3D - 246 305 IPR036638 GO:0046983
Cme01g00118 337 CDD bHLH_AtIND_like 249 311 - -
Cme01g00118 337 SMART finulus 254 303 IPR011598 GO:0046983
Cme01g00118 337 MobiDBLite consensus disorder prediction 166 260 - -
Cme01g00118 337 MobiDBLite consensus disorder prediction 188 252 - -
Cme01g00118 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 248 297 IPR011598 GO:0046983
Cme01g00118 337 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 30 325 - -
Cme01g00118 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 248 313 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g00118 Cme07g02178 CCT
Cme01g00118 Cme07g02178 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00118 Cme-Chr1:844087 Cme02g01076 Cme-Chr2:15788112 9.26E-21 dispersed
Cme11g00295 Cme-Chr11:3162208 Cme01g00118 Cme-Chr1:844087 2.96E-17 dispersed
Cme01g00397 Cme-Chr1:2849024 Cme01g00118 Cme-Chr1:844087 1.42E-12 transposed
Cme09g00932 Cme-Chr9:13028405 Cme01g00118 Cme-Chr1:844087 2.85E-26 transposed
Cme01g00118 Cme-Chr1:844087 Cme03g02098 Cme-Chr3:28290488 3.22E-38 wgd
Cme01g00118 Cme-Chr1:844087 Cme07g02178 Cme-Chr7:26146937 5.35E-65 wgd
Cme01g00118 Cme-Chr1:844087 Cme07g00293 Cme-Chr7:1901015 2.51E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40685 PF00010 HLH 1.30E-08 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00118 - - cmo:103495305 589.341