Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00126 ATGGCTAGCTTTGCAGGAACCACACAGAAATGCATGGCTTGCGAGAAGACCGTTTATCTTGTAGATAAGCTGACTGCTGATAATAGAGTGTTCCATAAGAGGCACTCTCAAGGAACTCCAAAACTCATGAAACCAGAAAAGCCCAGCGAAAATGAGAATGCAAAGTCAGTGTCCAACATGTTTGGTGGCACCAGAGACAAATGTTCAGGCTGTACCAAGACTGTTTATCCCATTGAAAAGGTAACGGTGAACGGGACGGCGTACCACAAAAGCTGCTTTAAATGTAGCCATGGAGGATGCACAATAAGTCCATCAAATTACATAGCACATGAGGGAAAACTATATTGCAAACATCATCACATTCAACTATTCAAGGAGAAAGGAAATTACAGCCAACTTGAAACTGAGCGCCAAAAGAACAATTCAGCAGTGGCAGCGGCAATCAAATTAACCACTCCAATGGAAATTGCAGCTGAATCATAG 483 42.65 MASFAGTTQKCMACEKTVYLVDKLTADNRVFHKRHSQGTPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKNNSAVAAAIKLTTPMEIAAES 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 911890 913489 + MELO3C018524.2.1 Cme01g00126 317102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00126 160 MobiDBLite consensus disorder prediction 32 58 - -
Cme01g00126 160 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 94 133 - -
Cme01g00126 160 ProSiteProfiles LIM domain profile. 66 126 IPR001781 -
Cme01g00126 160 PANTHER OS06G0237300 PROTEIN 1 33 IPR045268 GO:0051015
Cme01g00126 160 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 1 33 - -
Cme01g00126 160 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 37 145 - -
Cme01g00126 160 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 60 93 - -
Cme01g00126 160 CDD LIM2_SF3 68 128 - -
Cme01g00126 160 MobiDBLite consensus disorder prediction 32 51 - -
Cme01g00126 160 Pfam LIM domain 68 123 IPR001781 -
Cme01g00126 160 SMART lim_4 67 119 IPR001781 -
Cme01g00126 160 PANTHER OS06G0237300 PROTEIN 37 145 IPR045268 GO:0051015
Cme01g00126 160 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 33 - -
Cme01g00126 160 Gene3D Cysteine Rich Protein 63 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00126 K09377 CSRP; cysteine and glycine-rich protein - csv:101214700 290.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00126 Cme-Chr1:911890 Cme02g01945 Cme-Chr2:25762856 2.78E-53 dispersed
Cme01g00126 Cme-Chr1:911890 Cme03g02108 Cme-Chr3:28349639 1.48E-64 wgd
Cme01g00126 Cme-Chr1:911890 Cme07g00281 Cme-Chr7:1823327 9.73E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g720 . . . . . . . . Cmo19g00561 Cmo11g01422 . . . . Sed10g1170 Cpe04g00329 Cpe15g00434 Bhi05g01027 Tan02g1724 Cmetu03g1320 Lac12g0158 . . . Cla02g00689 Cam02g0721 Cec02g0735 Cco02g0757 Clacu02g0733 Cmu02g0729 Cre02g1040 . . . . Lsi03g00583 Csa07g00679 . Cme01g00126 . . . . . . . . . . . Cma11g01697 Cma19g00547 Car11g01146 Car19g00404 . . . . . . . . . . . . . . . . . . Chy01g00135 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000380 2 4 3 3 2 4 8 4 4 3 3 4 8 4 4 7 4 3 8 4 4 4 4 4 4 3 4 8 4 3 128
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40686 PF00412 LIM 5.80E-13 CL0167 Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00126 Cme_Chr01 FPKM 57.268623 62.612766 22.950417 25.041431 39.032402 42.19384 36.310047 15.754854 17.360426 15.786805