Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00137 ATGAATCTTTTCAAATATATCTCCCTTTCTCTTATACTCTCTCCATTGATCATCAACTTTCTCATGCTTCCCTTCTCTTTTGCCCAAGACTCAATCAAAGACTTTGTGGATGCCCACAACGCTGCTCGTGCTCAAGTCGGCGTCGGTCCTGTCCACTGGAACAAGACAGTGGCAGACTACGCTCATCAATATGCCAACAAGCGCATCAATGATTGTAACCTAGTCCATTCCAAAGGACCTTATGGAGAAAATATTGCATGGGGCAGCAGCAACTTGGCAGGTACCGTCGCAGTTCGTATGTGGGTGAGTGAGAAACAATTTTATAACTATGATACTAATTCATGTGTTCGTGGCAAGATGTGTGGCCATTACACTCAAGTGGTGTGGAGAAATTCTGTGAGAATTGGATGTGCAAAAGTGAGATGTAAAAGTGGGGGTACGTTCATCATTTGCAACTATGATCCTAGAGGTAATATTAGAGGACAGAGGCCATATGGTGAAGGGACGCTTCAACTATGA 519 43.74 MNLFKYISLSLILSPLIINFLMLPFSFAQDSIKDFVDAHNAARAQVGVGPVHWNKTVADYAHQYANKRINDCNLVHSKGPYGENIAWGSSNLAGTVAVRMWVSEKQFYNYDTNSCVRGKMCGHYTQVVWRNSVRIGCAKVRCKSGGTFIICNYDPRGNIRGQRPYGEGTLQL 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1010602 1011238 - MELO3C018536.2.1 Cme01g00137 317113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00137 172 Pfam Cysteine-rich secretory protein family 36 153 IPR014044 -
Cme01g00137 172 ProSitePatterns CRISP family signature 1. 122 132 IPR018244 GO:0005576
Cme01g00137 172 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 26 165 IPR001283 -
Cme01g00137 172 CDD CAP_PR-1 33 165 - -
Cme01g00137 172 PRINTS Allergen V5/Tpx-1 family signature 148 161 IPR001283 -
Cme01g00137 172 PRINTS Allergen V5/Tpx-1 family signature 51 69 IPR001283 -
Cme01g00137 172 PRINTS Allergen V5/Tpx-1 family signature 97 110 IPR001283 -
Cme01g00137 172 PRINTS Allergen V5/Tpx-1 family signature 121 137 IPR001283 -
Cme01g00137 172 Gene3D CAP 30 165 IPR035940 -
Cme01g00137 172 PANTHER PATHOGENESIS-RELATED PROTEIN 1 26 165 - -
Cme01g00137 172 ProSitePatterns CRISP family signature 2. 148 159 IPR018244 GO:0005576
Cme01g00137 172 SUPERFAMILY PR-1-like 12 168 IPR035940 -
Cme01g00137 172 SMART SCP_3 30 161 IPR014044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00137 K13449 PR1; pathogenesis-related protein 1 - csv:101212774 306.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00137 Cme-Chr1:1010602 Cme01g00140 Cme-Chr1:1023454 5.21E-84 dispersed
Cme08g02354 Cme-Chr8:30482296 Cme01g00137 Cme-Chr1:1010602 4.49E-45 dispersed
Cme01g00137 Cme-Chr1:1010602 Cme01g00139 Cme-Chr1:1020103 1.08E-76 proximal
Cme11g00311 Cme-Chr11:3294068 Cme01g00137 Cme-Chr1:1010602 2.17E-32 transposed
Cme01g00137 Cme-Chr1:1010602 Cme07g02221 Cme-Chr7:26387904 2.64E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g790 . Blo03g00054 Bda06g01150 . . . Bma05g00637 . Cmo19g00544 Cmo11g01430 . . . . Sed10g1935 . . Bhi05g01000 Tan02g1067 Cmetu01g2331 Lac12g0135 . . . Cla02g00703 Cam02g0736 Cec02g0750 Cco02g0776 Clacu02g0746 Cmu02g0741 Cre02g1054 . . . . Lsi03g00608 Csa07g00665 . Cme01g00137 . . . . . . . . . . . . Cma19g00535 . . . . . . . . . . . . . . . . . . . . Chy01g00149 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00137 Cme_Chr01 FPKM 43.861423 45.941422 49.002853 49.01178 48.996159 44.509808 49.706635 48.763874 54.090469 56.752422