Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00139 ATGGATCTTCTCAACCTCTCCTTCATTCTCTTTTGTGTCTTGAACTGCTTCACCATGCTTCCCTCTTCTCTCGCTCAAGACTCGCCTCAAGACTATCTCAATGGCCACAATCAGGCCCGTGCTGCAGTTCGTGTCCGGCTTATCCAATGGGACGAGAAGGTGGCAAATTATTCCAGACAATATGCCAACCTACGCATGAATGATTGTAGGTTGGTGCATTCAAATGGACCATACGGGGAGAATATTGCATGGGGTAGCCCTGACTTGAGTGGCACCGATGCAGTCAAACTTTGGGTGAATGAGAAGCAGTACTACGACTATAACACCAACTCATGCGCCAGCGGAAAGGTGTGTGGCCATTATACTCAAGTGGTTTGGAAGAACTCAGTGAGACTTGGATGTGCAAAAGTGAAGTGCAGAAACAAAGGTGGTGTGTTTATTGTTTGTAACTATGACCCTAGAGGCAATATTGTTGGTCAGAGGCCATATTAA 492 46.34 MDLLNLSFILFCVLNCFTMLPSSLAQDSPQDYLNGHNQARAAVRVRLIQWDEKVANYSRQYANLRMNDCRLVHSNGPYGENIAWGSPDLSGTDAVKLWVNEKQYYDYNTNSCASGKVCGHYTQVVWKNSVRLGCAKVKCRNKGGVFIVCNYDPRGNIVGQRPY 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1020103 1020594 - MELO3C018538.2.1 Cme01g00139 317115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00139 163 CDD CAP_PR-1 29 163 - -
Cme01g00139 163 Coils Coil 47 67 - -
Cme01g00139 163 SUPERFAMILY PR-1-like 20 163 IPR035940 -
Cme01g00139 163 Pfam Cysteine-rich secretory protein family 33 151 IPR014044 -
Cme01g00139 163 Gene3D CAP 27 163 IPR035940 -
Cme01g00139 163 PANTHER PATHOGENESIS-RELATED PROTEIN 1 22 163 - -
Cme01g00139 163 ProSitePatterns CRISP family signature 2. 146 157 IPR018244 GO:0005576
Cme01g00139 163 PRINTS Allergen V5/Tpx-1 family signature 48 66 IPR001283 -
Cme01g00139 163 PRINTS Allergen V5/Tpx-1 family signature 94 107 IPR001283 -
Cme01g00139 163 PRINTS Allergen V5/Tpx-1 family signature 118 134 IPR001283 -
Cme01g00139 163 PRINTS Allergen V5/Tpx-1 family signature 146 159 IPR001283 -
Cme01g00139 163 ProSitePatterns CRISP family signature 1. 119 129 IPR018244 GO:0005576
Cme01g00139 163 SMART SCP_3 27 159 IPR014044 -
Cme01g00139 163 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 22 163 IPR001283 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00139 K13449 PR1; pathogenesis-related protein 1 - csv:101213016 312.383
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g00139 Cme07g02221 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00139 Cme-Chr1:1020103 Cme01g00141 Cme-Chr1:1030810 3.03E-77 dispersed
Cme04g02585 Cme-Chr4:31865756 Cme01g00139 Cme-Chr1:1020103 1.22E-45 dispersed
Cme11g00311 Cme-Chr11:3294068 Cme01g00139 Cme-Chr1:1020103 1.60E-33 dispersed
Cme01g00137 Cme-Chr1:1010602 Cme01g00139 Cme-Chr1:1020103 1.08E-76 proximal
Cme01g00139 Cme-Chr1:1020103 Cme01g00140 Cme-Chr1:1023454 5.37E-86 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g792 . Blo03g00053 Bda06g01149 . Bpe07g00298 . Bma05g00636 Bma12g00310 Cmo19g00543 . . . . . . Cpe04g00336 Cpe15g00425 . . . . . . . Cla02g00705 Cam02g0738 Cec02g0752 Cco02g0778 Clacu02g0748 Cmu02g0742 Cre02g1056 . . . . Lsi03g00618 Csa07g00664 . Cme01g00139 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00150 Cme07g02221
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00139 Cme_Chr01 FPKM 55.447075 63.961861 204.995758 203.164886 106.727806 105.795876 112.242188 97.086525 89.037674 90.960159