Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00140 ATGGATGTTCTCAAGCTCTCCCTCTCCCTCTCCCTCTTTTGTGTCCTGACCTTTATCATGCTTCCATCTTCTCTTGCTCAAGACTCACCTCGAGACTTCGTCAATGCCCACAACGCAGCTCGTGCCCAAGTTGGGGTTGGGCCGGTTCACTGGGACGAAAGAGTAGCGAGTTTTGCTCGACAATATGCGAACCAACGCATCAACGACTGTAGGCTAGTGCACTCTGGCGGACCTTACGGGGAGAATATTGCATGGGGCATGCCAGACTTATCAGGCACGGCTGCAGTTCAAATGTGGGTGAATGAGAAGCAGTTCTACAATTATGGCTCCAATACATGTGCGGCTGGTAAGGTGTGTGGTCACTACACTCAAGTTGTGTGGAGGAATTCAGTGAGAATTGGATGTGCCAAAGTGAGATGCACAAATAATCGTGGCACGTTTATCATTTGCAACTATGAACCCCGTGGGAATATCATAGGCCAAAAGCCATATTGA 495 49.09 MDVLKLSLSLSLFCVLTFIMLPSSLAQDSPRDFVNAHNAARAQVGVGPVHWDERVASFARQYANQRINDCRLVHSGGPYGENIAWGMPDLSGTAAVQMWVNEKQFYNYGSNTCAAGKVCGHYTQVVWRNSVRIGCAKVRCTNNRGTFIICNYEPRGNIIGQKPY 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1023454 1024330 - MELO3C018539.2.1 Cme01g00140 317116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00140 164 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 21 164 IPR001283 -
Cme01g00140 164 PRINTS Allergen V5/Tpx-1 family signature 49 67 IPR001283 -
Cme01g00140 164 PRINTS Allergen V5/Tpx-1 family signature 95 108 IPR001283 -
Cme01g00140 164 PRINTS Allergen V5/Tpx-1 family signature 119 135 IPR001283 -
Cme01g00140 164 PRINTS Allergen V5/Tpx-1 family signature 147 160 IPR001283 -
Cme01g00140 164 Gene3D CAP 28 164 IPR035940 -
Cme01g00140 164 SUPERFAMILY PR-1-like 13 164 IPR035940 -
Cme01g00140 164 Pfam Cysteine-rich secretory protein family 34 152 IPR014044 -
Cme01g00140 164 PANTHER PATHOGENESIS-RELATED PROTEIN 1 21 164 - -
Cme01g00140 164 ProSitePatterns CRISP family signature 1. 120 130 IPR018244 GO:0005576
Cme01g00140 164 SMART SCP_3 28 160 IPR014044 -
Cme01g00140 164 CDD CAP_PR-1 30 164 - -
Cme01g00140 164 ProSitePatterns CRISP family signature 2. 147 158 IPR018244 GO:0005576
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00140 K13449 PR1; pathogenesis-related protein 1 - csv:101212539 302.367
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00137 Cme-Chr1:1010602 Cme01g00140 Cme-Chr1:1023454 5.21E-84 dispersed
Cme01g00140 Cme-Chr1:1023454 Cme01g00144 Cme-Chr1:1042545 9.98E-59 dispersed
Cme01g00146 Cme-Chr1:1049107 Cme01g00140 Cme-Chr1:1023454 1.02E-47 dispersed
Cme01g00139 Cme-Chr1:1020103 Cme01g00140 Cme-Chr1:1023454 5.37E-86 tandem
Cme01g00140 Cme-Chr1:1023454 Cme01g00141 Cme-Chr1:1030810 2.64E-83 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g793 . . Bda06g01148 . . . . . . . . . . . . . . . . . . . . . Cla02g00706 Cam02g0740 Cec02g0754 Cco02g0780 Clacu02g0749 Cmu02g0743 Cre02g1057 . . . . Lsi03g00622 Csa07g00663 . Cme01g00140 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00151 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00140 Cme_Chr01 FPKM 16.598705 16.586142 13.898629 12.015476 11.869104 8.058597 11.00327 6.567385 6.945708 7.512203