Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00144 ATGGTTTCCTCCACCATTATTATTCTGTCTACCATTTGCTTGGTAAGTTTCCTCCTAGCTACTACCATCTCCAATGCCCAAAACTCCCCCCAAGATTTTGTCGATACGCACAACGACATCCGAGCAGCGGTAGGTGTCGGCCCAGTCTCCTGGGACGACACTCTAGCTGCCTATGCTCAGAGTTATGCTGATAGTAAGATCGATACTTGTGAGATGGAGCACTCCAATGGACCCTACGGTGAAAACCTAGCTGAGGGGTATGACGAGATGACAGGGGTGGAGGCGGTCAAGTTCTGGGCAACCGAGAAAAAGTTCTACAACCACCATTTGAATCGATGCGTCGGGGACGAGTGTGGGCACTATACACAAATAGTGTGGAGGCACACTACAAACATAGGGTGTGGTAGAGTGAAGTGTGAGAACAATTGGGTTTTTGTGATCTGCAACTATAATCCTCCTGGCAACTATATTGGCCAACATCCTTACTGA 489 48.26 MVSSTIIILSTICLVSFLLATTISNAQNSPQDFVDTHNDIRAAVGVGPVSWDDTLAAYAQSYADSKIDTCEMEHSNGPYGENLAEGYDEMTGVEAVKFWATEKKFYNHHLNRCVGDECGHYTQIVWRHTTNIGCGRVKCENNWVFVICNYNPPGNYIGQHPY 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1042545 1043212 - MELO3C018544.2.1 Cme01g00144 317120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00144 162 CDD CAP_PR-1 30 162 - -
Cme01g00144 162 Gene3D CAP 27 162 IPR035940 -
Cme01g00144 162 Pfam Cysteine-rich secretory protein family 35 150 IPR014044 -
Cme01g00144 162 ProSitePatterns CRISP family signature 2. 145 156 IPR018244 GO:0005576
Cme01g00144 162 PANTHER - 1 162 - -
Cme01g00144 162 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 1 162 IPR001283 -
Cme01g00144 162 SMART SCP_3 28 158 IPR014044 -
Cme01g00144 162 SUPERFAMILY PR-1-like 28 162 IPR035940 -
Cme01g00144 162 PRINTS Allergen V5/Tpx-1 family signature 49 67 IPR001283 -
Cme01g00144 162 PRINTS Allergen V5/Tpx-1 family signature 95 108 IPR001283 -
Cme01g00144 162 PRINTS Allergen V5/Tpx-1 family signature 118 134 IPR001283 -
Cme01g00144 162 PRINTS Allergen V5/Tpx-1 family signature 145 158 IPR001283 -
Cme01g00144 162 ProSitePatterns CRISP family signature 1. 119 129 IPR018244 GO:0005576
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00144 K13449 PR1; pathogenesis-related protein 1 - csv:101211323 332.798
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00140 Cme-Chr1:1023454 Cme01g00144 Cme-Chr1:1042545 9.98E-59 dispersed
Cme01g00144 Cme-Chr1:1042545 Cme01g00147 Cme-Chr1:1051651 1.64E-81 dispersed
Cme01g00143 Cme-Chr1:1039272 Cme01g00144 Cme-Chr1:1042545 1.40E-47 tandem
Cme01g00144 Cme-Chr1:1042545 Cme01g00145 Cme-Chr1:1046949 1.68E-68 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g799 Blo02g00914 . Bda06g01146 . Bpe07g00300 . . Bma12g00312 Cmo19g00541 . . . . . . . Cpe15g00420 . . . . . . . Cla02g00709 Cam02g0746 Cec02g0757 Cco02g0784 Clacu02g0752 Cmu02g0746 Cre02g1061 . Cone8ag1053 . . Lsi03g00626 Csa07g00658 . Cme01g00144 . . . . . Bpe05g00458 . . . . . Cma11g01690 Cma19g00532 . . . Cpe01g00380 . . . . . . . . . . . . . . . . Chy01g00153 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002412 6 2 3 5 3 2 0 2 2 2 2 2 2 2 2 2 2 1 1 2 2 4 0 2 1 0 2 2 2 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00144 Cme_Chr01 FPKM 20.683762 22.655405 24.794847 22.742115 69.912132 84.440392 66.86557 13.860092 14.022477 14.247865