Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00145 ATGGGATTTGCCAACATTCTCTCCACCTTTTGTCTATTGGGGCTAACCCTAACCCTAGCTTCTACTGCCCCCATCTTGGCCAAAAGCTACCCTAAAAACTACGTTGATGCACACAACGCCATCCGTGCAGAAGTTGGCGTCGACCCTCTTCATTGGAACTCGACTTTGGCTGCTTATGCTCAAAATTACGCCAACACGAAGATCGCTACTTGTCAAATGGAGCACTCGGGAGGACCTTACGGCGAAAACCTAGCAGAGGGATACGAAGAGATGACAGCTGAGATGGCGGTGAGTCTCTGGGCTGACGAGAAGAAACATTACGACTACAACTCGAACACGTGCACGAATGACGCTAGCAATTGCCTCCATTATACACAGTTGGTATGGAGGAACACAAAATCTGTTGGGTGTGCAGAAGTGAAATGCCAAAACAATTGGGTGTTTTTGATATGCAGCTATTATCCTCCAGGCAACTATATAGGCCAACGTCCATATTAA 498 47.19 MGFANILSTFCLLGLTLTLASTAPILAKSYPKNYVDAHNAIRAEVGVDPLHWNSTLAAYAQNYANTKIATCQMEHSGGPYGENLAEGYEEMTAEMAVSLWADEKKHYDYNSNTCTNDASNCLHYTQLVWRNTKSVGCAEVKCQNNWVFLICSYYPPGNYIGQRPY 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1046949 1047446 - MELO3C018545.2.1 Cme01g00145 317121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00145 165 CDD CAP_PR-1 31 165 - -
Cme01g00145 165 Pfam Cysteine-rich secretory protein family 35 153 IPR014044 -
Cme01g00145 165 PRINTS Venom allergen 5 signature 50 68 IPR002413 -
Cme01g00145 165 PRINTS Venom allergen 5 signature 120 139 IPR002413 -
Cme01g00145 165 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 25 165 IPR001283 -
Cme01g00145 165 Gene3D CAP 29 165 IPR035940 -
Cme01g00145 165 PRINTS Allergen V5/Tpx-1 family signature 50 68 IPR001283 -
Cme01g00145 165 PRINTS Allergen V5/Tpx-1 family signature 96 109 IPR001283 -
Cme01g00145 165 PRINTS Allergen V5/Tpx-1 family signature 121 137 IPR001283 -
Cme01g00145 165 PRINTS Allergen V5/Tpx-1 family signature 148 161 IPR001283 -
Cme01g00145 165 SMART SCP_3 29 161 IPR014044 -
Cme01g00145 165 ProSitePatterns CRISP family signature 2. 148 159 IPR018244 GO:0005576
Cme01g00145 165 PANTHER PATHOGENESIS-RELATED PROTEIN 1 25 165 - -
Cme01g00145 165 SUPERFAMILY PR-1-like 9 165 IPR035940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00145 K13449 PR1; pathogenesis-related protein 1 - csv:101210987 311.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00142 Cme-Chr1:1037020 Cme01g00145 Cme-Chr1:1046949 4.56E-63 dispersed
Cme01g00145 Cme-Chr1:1046949 Cme01g00147 Cme-Chr1:1051651 1.17E-67 dispersed
Cme01g00144 Cme-Chr1:1042545 Cme01g00145 Cme-Chr1:1046949 1.68E-68 tandem
Cme01g00145 Cme-Chr1:1046949 Cme01g00146 Cme-Chr1:1049107 1.24E-71 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g802 . . Bda06g01145 . . . . . Cmo19g00540 . . . . . . Cpe04g00339 Cpe15g00419 . . . . . . . Cla02g00713 Cam02g0763 Cec02g0761 Cco02g0787 Clacu02g0754 Cmu02g0748 Cre02g1065 . . . . Lsi03g00627 Csa07g00657 . Cme01g00145 . . . . . . . . Sed07g1155 . . Cma11g01688 . . . . . Bhi11g01091 Tan01g0594 Cmetu07g1308 . . . . . . . . . . . Lsi03g00997 . Chy01g00154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002300 0 1 0 0 0 16 0 4 4 0 1 3 1 1 1 2 2 0 1 3 1 1 0 3 1 10 1 2 4 0 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00145 Cme_Chr01 FPKM 1.538462 1.180454 65.335083 63.37838 4.578497 5.050411 5.796221 3.92997 2.852929 3.659112