Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00146 ATGGCATCTACGACTAAGTTTGTTTCTGCATTTTGTGTTGTTGGGCTATCCCTAATCTTAGCTCCAATATCTCCCACGATTGCAAAAAGCAGCCCCCAGGAATTCGTCGATGCCCATAATGCCATCCGTGCCAAGTATGGCGTCGGCCCGGTCACTTGGAACAAAACTTTGGCCAGTTATGCTGAAAACTATGCCAAAACTAGGGTTGCTACTTGCGAAATGGAGCATTCTATGGGACCTTACGGTGAAAACTTGGCCGAAGCATTTGAGAAGACAACAGCAGAATTGACAGTGAACTATTGGGCTACTGAGGATAAATTTTACGACCATAAATCAAACAAGTGTGTTGAGGAAGAGTGCGGCCATTTCCTTCAAGTCGTGTGGAAGGACACGACATCGATTGGTTGTGCAGAAGTTAAGTGCAACAACAACTATATTTTCACTATCTGTAACTATTATCCTCCAGGAGGGTATCCTGATCAACTTCCATACTGA 495 44.24 MASTTKFVSAFCVVGLSLILAPISPTIAKSSPQEFVDAHNAIRAKYGVGPVTWNKTLASYAENYAKTRVATCEMEHSMGPYGENLAEAFEKTTAELTVNYWATEDKFYDHKSNKCVEEECGHFLQVVWKDTTSIGCAEVKCNNNYIFTICNYYPPGGYPDQLPY 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1049107 1049883 - MELO3C018546.2.1 Cme01g00146 317122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00146 164 CDD CAP_PR-1 32 164 - -
Cme01g00146 164 PANTHER PATHOGENESIS-RELATED PROTEIN 1B 22 164 - -
Cme01g00146 164 PRINTS Allergen V5/Tpx-1 family signature 51 69 IPR001283 -
Cme01g00146 164 PRINTS Allergen V5/Tpx-1 family signature 97 110 IPR001283 -
Cme01g00146 164 PRINTS Allergen V5/Tpx-1 family signature 120 136 IPR001283 -
Cme01g00146 164 PRINTS Allergen V5/Tpx-1 family signature 147 160 IPR001283 -
Cme01g00146 164 SMART SCP_3 30 160 IPR014044 -
Cme01g00146 164 Pfam Cysteine-rich secretory protein family 36 152 IPR014044 -
Cme01g00146 164 SUPERFAMILY PR-1-like 29 164 IPR035940 -
Cme01g00146 164 Gene3D CAP 26 164 IPR035940 -
Cme01g00146 164 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 22 164 IPR001283 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00146 K13449 PR1; pathogenesis-related protein 1 - csv:101210746 330.872
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00146 Cme-Chr1:1049107 Cme01g00140 Cme-Chr1:1023454 1.02E-47 dispersed
Cme01g00145 Cme-Chr1:1046949 Cme01g00146 Cme-Chr1:1049107 1.24E-71 tandem
Cme01g00146 Cme-Chr1:1049107 Cme01g00147 Cme-Chr1:1051651 1.28E-66 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g805 Blo02g00912 Blo03g00050 . . . . Bma05g00634 Bma12g00314 Cmo19g00538 Cmo11g01434 . . . . Sed06g0830 . Cpe15g00418 Bhi05g00999 Tan02g1068 Cmetu01g1966 Lac12g0134 . . . Cla02g00718 Cam02g0764 Cec02g0762 Cco02g0790 Clacu02g0757 Cmu02g0752 Cre02g1067 . . . . Lsi03g00628 Csa07g00656 . Cme01g00146 . . . . . Bpe05g00457 . . . Cmo04g00453 . . Cma19g00527 . . . . . . . . . . . . . . . . . . . . Chy01g00155 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004442 0 2 0 0 0 2 0 2 2 1 1 2 4 1 2 3 2 0 2 2 1 0 0 1 1 1 8 1 2 0 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00146 Cme_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0