Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00152 ATGACTAATTCACCATTTTCCTCCGGCCGCCGCCCTCCTCTGGTGGCTCACCTCCTCCTTCTTTTCCTCCTCGTCTGTTCATTTTCCCTCTCCCATTGTGATGAACTTCAACCACTTTTAGACCTCAAATCTGCCTTCTCTTCTTCTTCTTCTCCTTCGGCTTTTAGCTCTTGGATTAAAGGGAAGGATGTTTGCAGCAGCTTCCATGGCATTGTATGTAATTCCAATGGCTTTGTAGTAGAAATCAATCTCCCTGCTCAGAACTTATCTGGGATTATTCCTTTTGATTCTATTTGCTCTTTGCAATCTCTTGAGAAGCTGTCTTTTGGGTTGAATTCTTTGTATGGGAAGGTCAGTGATGGTTTGAGGAACTGTTCTAAGTTAAAGTATTTGGATTTGGGTCAGAATTCCTTTTCTGGTGAAGTACCCGATTTGTCTTCTTTAGTGGGATTGAGATTCTTGAGTTTGAATAACAGTGGGTTTTCTGGAGATTTTCCATGGAAATCTCTTGTTAATCTTACTGATTTGGAGTTCTTGAGCCTTGGAGACAATACATTTAACCCAACAACTTCATTTCCATTAGAGATTCTTGAGCTTAAGAACCTTAATTGGCTTTACCTCTCTAACTGCACCATTTATGGTGAAATCCCATCTAGGATTGGGAACTTGTCTTTGCTTGAGAATCTTGAACTCTCACAAAATAAACTCATTGGTGAAATTCCTTATGAGATTGTGAACTTGAAGAAGCTATGGCAGTTGGAGTTACATGAGAATTCCTTGACCGGGAAGCTACCGGTCGGGCTTGGTAACCTCACTGGACTGAGGAACTTTGATGCCTCATCTAATAATCTTGAAGGTGATTTAACGGAGTTGAGGTTCTTGACCAATTTGAAGTCCTTGCAGCTCTTTGAGAATCGATTTTCCGGAACGATCCCAGAGGAGTTTGGGGACTTTAAGGACCTTGTTGAGCTCTCTCTTTACCAAAACAACCTTACTGGCAATCTCCCTCAAAGAATTGGATCTTGGGCAGCCTTCGTGTTCATTGATGTTTCAGAGAATTTCTTGTCCGGACCTATACCTCCAGACATGTGCAAGCAGGGCAGAATGACTGATCTATTGATGCTACAAAACAATTTCATTGGTGGAATCCCAGAAAGCTACATGAATTGTAAATCTTTGAATCGTTTTCGTGTAAATAATAACTCTCTTTCGGGTGTTGTTCCTGCTGGGATTTGGAGTCTGCCAAATCTTAGCATCATTGATCTTTCAACGAATCAATTTGAAGGTCCTGTGACTTCTGATATTGGTAAAGCAAAAGCTCTTGCCCAGTTATTCTTATCGAATAACCGGTTTTCGGGTAACTTACCGGCCGAGTTAGGCGAAGTATCATCCTTAGTCTCAATCAAGCTCGATTCCAACCATTTTGTTGGTGCAATACCTGAATCACTCGGCAAGTTGAAGAACTTAAGCAGCCTTTCTTTGAATGACAACAAATTTTCCGGCAATATACCTAGCTCACTAGGCTCTTGCACTTCTCTTTCTACCATAGATTTATCTATGAATTCATTCTCCGGGCATATTTCAGAGAATCTTGGTTACTTGCCAATTCTTAACTCCTTGAATCTGTCTAACAATGAACTTTCAGGTGAAATTCCAACTACTTTCTCAAAGTTGAAGCTAAGCAGTTTCGACCTGTCTAATAACAGGTTAATTGGTCAAGTACCTGATTCACTTGCAATCCAAGCCTTTGATGAAAGTTTCATGGGAAATCCTGGCTTGTGTAGTGAGTCTATTAGATACTTGAGTTCATGTTCACCAACCTCTAGATCATCCAGCCATCTCACCTCGTTGTTGTCATGTATCATTGCTGGAATTCTACTGTTGCTTGTGTCCTTCTTGTGTTTGTTGTTTGTGAAATTGAAACGTAACAAGGATGCTAAGCATTTACTGAAATCCAAATCATGGGATATGAAGCCATATCGCATAGTGTGCTTCACGGAAAAGGAAATCATAGATTCAATCAATTCTCACAACTTGATAGGAAAAGGAGGATCTGGAAATGTGTACAAAGTCGTACTAAGTAACGGCAAAGAACTCGCCGTGAAACATATATGGCAATCGAGCTTTAGCGACCAAGCAAATTGTCGGACTAGTGCAACCATTTTAACTAAAAGAAAGACCAGGTCATCCGAATATGATGCAGAAGTAGCTACATTGAGTTCAGTGAGGCATAACAACGTGGTGAAATTATACTGTAGCATTTCAAGTGAGGACAGTAACCTTCTGGTCTACGAGTACTTACCGAATGGAAGTTTATGGGATCAGTTGCATACTAGCAGGAAGATTGAGATGGGATGGCAAATAAGGTACGAAATAGCGGTTGGAGCAGCAAGGGGCCTTGAGTATTTGCATCATGGGTGTGACCGACCTGTAATTCACCGAGATGTAAAGTCAAGTAATATTTTGTTGGATAGTGATTGGAAACCTAGGATTGCAGATTTCGGGCTGGCGAAGATTCTGCAGGATGGCCATGGCCATGGGGTTGGAGATTCATCTCATGTCATTGCTGGGACACTCGGTTATATAGCCCCTGAATATGCATACACATGCAAGATAAACGAGAAGAGTGACGTTTACAGCTTTGGAGTTGTCCTAATGGAACTAGCAACAGGAAAGCAGCCCAATGAGGCAGAGTTTGGGGAGAACAAAGATATTGTACAATGGGCACACAGCAGAATGAGAGAACTAAAAGGTAATCTGAAAGATATGGTAGATCCTAGCATCTCAGAGGCTCAGGTGGAGGATGCAGTCAAAGTGCTAAGGATCGCACTTCGCTGCACGGCTAAGATTCCATCTACAAGGCCCTCCATGAGAATGGTGGTTCATATGCTCGAAGAGGCTGAACCTTATAACTTTATTGACATTGTTGTCAAGAAAGAATGTGAAAACTAA 2952 41.5 MTNSPFSSGRRPPLVAHLLLLFLLVCSFSLSHCDELQPLLDLKSAFSSSSSPSAFSSWIKGKDVCSSFHGIVCNSNGFVVEINLPAQNLSGIIPFDSICSLQSLEKLSFGLNSLYGKVSDGLRNCSKLKYLDLGQNSFSGEVPDLSSLVGLRFLSLNNSGFSGDFPWKSLVNLTDLEFLSLGDNTFNPTTSFPLEILELKNLNWLYLSNCTIYGEIPSRIGNLSLLENLELSQNKLIGEIPYEIVNLKKLWQLELHENSLTGKLPVGLGNLTGLRNFDASSNNLEGDLTELRFLTNLKSLQLFENRFSGTIPEEFGDFKDLVELSLYQNNLTGNLPQRIGSWAAFVFIDVSENFLSGPIPPDMCKQGRMTDLLMLQNNFIGGIPESYMNCKSLNRFRVNNNSLSGVVPAGIWSLPNLSIIDLSTNQFEGPVTSDIGKAKALAQLFLSNNRFSGNLPAELGEVSSLVSIKLDSNHFVGAIPESLGKLKNLSSLSLNDNKFSGNIPSSLGSCTSLSTIDLSMNSFSGHISENLGYLPILNSLNLSNNELSGEIPTTFSKLKLSSFDLSNNRLIGQVPDSLAIQAFDESFMGNPGLCSESIRYLSSCSPTSRSSSHLTSLLSCIIAGILLLLVSFLCLLFVKLKRNKDAKHLLKSKSWDMKPYRIVCFTEKEIIDSINSHNLIGKGGSGNVYKVVLSNGKELAVKHIWQSSFSDQANCRTSATILTKRKTRSSEYDAEVATLSSVRHNNVVKLYCSISSEDSNLLVYEYLPNGSLWDQLHTSRKIEMGWQIRYEIAVGAARGLEYLHHGCDRPVIHRDVKSSNILLDSDWKPRIADFGLAKILQDGHGHGVGDSSHVIAGTLGYIAPEYAYTCKINEKSDVYSFGVVLMELATGKQPNEAEFGENKDIVQWAHSRMRELKGNLKDMVDPSISEAQVEDAVKVLRIALRCTAKIPSTRPSMRMVVHMLEEAEPYNFIDIVVKKECEN 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1095995 1099881 - MELO3C018552.2.1 Cme01g00152 317128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00152 983 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Cme01g00152 983 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Cme01g00152 983 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 17 975 - -
Cme01g00152 983 SUPERFAMILY L domain-like 193 429 - -
Cme01g00152 983 SMART serkin_6 674 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00152 983 ProSiteProfiles Protein kinase domain profile. 674 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00152 983 Gene3D Ribonuclease Inhibitor 33 190 IPR032675 -
Cme01g00152 983 SMART LRR_typ_2 294 317 IPR003591 -
Cme01g00152 983 SMART LRR_typ_2 534 557 IPR003591 -
Cme01g00152 983 SMART LRR_typ_2 199 223 IPR003591 -
Cme01g00152 983 SMART LRR_typ_2 247 271 IPR003591 -
Cme01g00152 983 SMART LRR_typ_2 486 510 IPR003591 -
Cme01g00152 983 SUPERFAMILY RNI-like 74 241 - -
Cme01g00152 983 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 17 975 - -
Cme01g00152 983 SUPERFAMILY Protein kinase-like (PK-like) 653 965 IPR011009 -
Cme01g00152 983 Gene3D Ribonuclease Inhibitor 349 612 IPR032675 -
Cme01g00152 983 Pfam Protein kinase domain 677 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00152 983 ProSitePatterns Protein kinases ATP-binding region signature. 680 702 IPR017441 GO:0005524
Cme01g00152 983 Gene3D Ribonuclease Inhibitor 191 344 IPR032675 -
Cme01g00152 983 Gene3D Phosphorylase Kinase; domain 1 658 766 - -
Cme01g00152 983 Gene3D Transferase(Phosphotransferase) domain 1 767 977 - -
Cme01g00152 983 SUPERFAMILY L domain-like 373 578 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00152 Cme-Chr1:1095995 Cme04g00206 Cme-Chr4:1518847 0 dispersed
Cme01g00152 Cme-Chr1:1095995 Cme04g00205 Cme-Chr4:1506131 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64587 PF00069 Pkinase 9.00E-45 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00152 - - csv:101210252 1717.59