Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme01g00155 | ATGTCTTTTCCCTTTCTGGGGTTCGACAAATTCAAGCTTTTCGCCATTATTGAGGGAATGGAGGATAATGGCTTTGTCAATCAGTGGCACAAGAGCTCAATGGATGATCTTGGTTTGCACCCATTAGCAGCTGCTTTTGGGGAGAATTTGCAGCATTCTTATGCTCAAACAAATATTGATCAGAAGGCTTCTTTAAACCATTCTCACAATGCCATACTTGGGTATGTGAAACAGCTCAAGAGTGATGGGTGGAGTTCATACCAAACAACTAATCATTTACCGAACTCACAAGTTGTTGCTTATCCGACTGTATCTGTTTCGGCTTCTAACTACACGAACCAAATGGACTTCACTAGGCCAAAAGAGGAGGTTGTGTGTCCTCAGAGTATTAGCAACCTCCCTTCTGACATGTTGATTTCTCAGGGCTCATTAGCCCATCAAAGCCACACAACCAAGTCGAATCGTGGAACAAGAAGTCCCTCTACAAACAGTAGAATCCCCCAGGCTCAAGATCATATTCTTGCAGAGCGGAGACGACGAGAGAAGCTCAGCCAGCGGTTCATTGCTTTGTCTGCTATAATTCCTGGCCTAAAGAAGATGGACAAGGCTTCAGTTCTTGGAGATGCCATTAAGTACCTGAAACAACTTCAAGAGAAAGTGAAGATACTAGAGGAACAAACCCGCAGGAAAGACATCGAATCCGTGGTATTTGTCAAGAAATCCCATGTTTTCGCTGATGGAAATGACACATCAAAAGAAGAGGATGAGCCACTTCCCGAAATTGAAGCGAGATTTTGCGACAAAAATGTCCTTATAAGAATACACTGTGAAAAAAAGAAAGATGTCATAGAGAGAACAGTAGCTGAAATTGAAAAATTGCACCTTATAATAGTCAACAGCAGCGTTATGTCATTTGGGAGTCTCGCTTTCGACATAACTATTATCGCACAGATGGATAATGAATTCTGTTTAACATTAAAGGACCTAGTGAAGAATTTGCAGTCAACTTTGCGCTTGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGAGCAGGAGCAGCCCTTGTGCTACAACAAAATAAAAACAACCATGGACAAACCTTATCCCTTTTTAAAGCCATTATGTTTACAGATGTTGCTCTTGAAGCAGCAAAATCTGTGTTGATTTCTTCTGTTTGGTGTTTTAGAGGGCATTCATGGAAATGTATGAGCCTCTTTTTTCAGTGA | 1224 | 41.91 | MSFPFLGFDKFKLFAIIEGMEDNGFVNQWHKSSMDDLGLHPLAAAFGENLQHSYAQTNIDQKASLNHSHNAILGYVKQLKSDGWSSYQTTNHLPNSQVVAYPTVSVSASNYTNQMDFTRPKEEVVCPQSISNLPSDMLISQGSLAHQSHTTKSNRGTRSPSTNSRIPQAQDHILAERRRREKLSQRFIALSAIIPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQTRRKDIESVVFVKKSHVFADGNDTSKEEDEPLPEIEARFCDKNVLIRIHCEKKKDVIERTVAEIEKLHLIIVNSSVMSFGSLAFDITIIAQMDNEFCLTLKDLVKNLQSTLRLSRSRSRSRSRAGAALVLQQNKNNHGQTLSLFKAIMFTDVALEAAKSVLISSVWCFRGHSWKCMSLFFQ | 407 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 1112296 | 1115047 | - | MELO3C018555.2.1 | Cme01g00155 | 317131 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme01g00155 | 407 | Gene3D | - | 166 | 236 | IPR036638 | GO:0046983 | |
| Cme01g00155 | 407 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 167 | 216 | IPR011598 | GO:0046983 | |
| Cme01g00155 | 407 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 172 | 230 | IPR036638 | GO:0046983 | |
| Cme01g00155 | 407 | SMART | finulus | 173 | 222 | IPR011598 | GO:0046983 | |
| Cme01g00155 | 407 | MobiDBLite | consensus disorder prediction | 143 | 171 | - | - | |
| Cme01g00155 | 407 | CDD | bHLH_AtNAI1_like | 169 | 241 | - | - | |
| Cme01g00155 | 407 | PANTHER | SYMBIOTIC AMMONIUM TRANSPORTER | 19 | 338 | - | - | |
| Cme01g00155 | 407 | Pfam | Helix-loop-helix DNA-binding domain | 170 | 217 | IPR011598 | GO:0046983 | |
| Cme01g00155 | 407 | PANTHER | BHLH TRANSCRIPTION FACTOR | 19 | 338 | - | - | |
| Cme01g00155 | 407 | Coils | Coil | 206 | 233 | - | - | |
| Cme01g00155 | 407 | MobiDBLite | consensus disorder prediction | 143 | 169 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme01g00155 | Cme-Chr1:1112296 | Cme08g00693 | Cme-Chr8:4590003 | 4.63E-54 | dispersed | |
| Cme01g00155 | Cme-Chr1:1112296 | Cme06g02473 | Cme-Chr6:31713059 | 2.48E-17 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 40687 | PF00010 | HLH | 3.00E-10 | No_clan | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme01g00155 | - | - | csv:101209844 | 634.024 |