Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00159 TTCTTCTTCTTCTTCTTCTTCGTCCCGCCGGCTCCTACTTCCTTTTCAGCAGCTCATTGTCGTCGGCCCTCTCTCCCTTCAGTACCGCTCCGCAGTTCCCTTTTAACGGGTTGCGCTGATTTCTTACTCTTACTGAAAAGATCAAGAGAAGTTTTTTATACAATGGGTAGTAAAAAGAAAGACTCTAACCCCACAGACGAAGTGGAGATTGAGAAAGATACATCGATGGATGACGTTGGTGCTGTTGTTTCAAAATCCTTAAAGAGAAAAATGAAGAAGGACAAAGAGAAAGATGGTGAACTGGAAAAGGGGGATGTTGGTATTCCCTCTTCTACCTTTCCTAATTCTGAGAAACCAATGGAGAGGAAAAAGAAAAGGAAAACATATGACAAAGAAAGAAAGCGAGCTACTTCAGAACAGGAAAAGCAAATAATTGCTAACTTTAAAGCCGAGGATACTAAGCCATCTTCTGTCTCTGTTTCAAGCAGTGGTCTCCCAGAATTTCATATCAGTGTTTTTAAGGACTTGGCATCTGCTGACATTTTGGTGAGAGAATCAGCTGCAGAAGCTTTGGCCACTGAGCTGCTAAAGGTTCAAGAAGCATATGACAAGCTTGAAAATAAGGACCTGGTTGAGGGTGGGTTAAAACTGGAAGCTGAGAAGGATGATGGCTTAGATAATTGTGCACCATCTGTGAGATATGCTGTACGAAGACTGATTCGTGGTGTGTCTTCTTCAAGAGAGTGTGCTAGACAGGGTTTTGCCTTAGGATTGACTGCATTGATAAGTACACTGCCCAGCATCAAGGTGGATTCATTGCTGAAACTCATTGTTAATATTTTAGAGGTTTCTTCATCGATGAAGGGCCAGGAAGCAAGGGACTGTCTTTTGGGTCGATTGTTTGCTTATGGGGCTCTTGTGCACTCAGGAAGACTAACTGAAGAATGCGCTTCTGATAAAAGCACTTCACATGTGAAGGAAATCATCAGTGTTCTTATATCTCTTGCAGCTAAAAAACGTTATCTTCAAGAACCTGCTGTCTCAATTATTTTAGAATTGATAGAAAAGTTAACACCTGAGTCAGTGTTGAATCACTTGCTTGAAGCTTCTGGAATTCGAGAGTGGTTTGAAGCAGCTACTGAAGTTGGGAACCCAGATGCACTGCTGTTGGCCTTAAAATTACGAGAAAAAATTTCTGCTGATTGTTCAATATTTGCTAAACTTTTACCAAATCCATTCACTCCTAGTAGATTTTTTTCTGTTGATCATCTGTCATCTCTAGCCAACTGTCTCAAGGAGTCTACTTTTTGCCAGCCCAGAGTTCACAGCTTATGGCCTGTTCTGGTAAACATTTTGTTGCCTGATACAGTTTTGCAAGCTCAAGATTCAATGTCTGTTACAACCTCATTGAAGAAGCATAAAAAGAATCGTAAAAGTGGCTCTTCTGAAGAAGAAATTCTGATAAACTTCCAAAATTTTTTTGAAGTTATAATTGAAGGAGCACTTCTGCTATCATCTCATGACCGTAAGCATTTGGTGTTTGACATTCTACTTCTTCTCCTGCCAAGACTGCCAACAATATTTGTCCCCACTATGCTTTCATATAAAGTTGTTCAGTGCCTGATGGACATACTTTCAACAAAGGATTCTTGGTTGTATAAAGTTGGGCAGAACTTTGTAAAAGAATTATCTGAATGGGCACAGCATGACGATGGCAGAAAAGTTGCTGTCATTATTGCTTTACAGAAGCACAGCAGTGTCAAGTTTGACAATATTACACGAACAAAAGCTGTTCAGAACCTGATTTCCGAGTTTAAGACAGAATCAGGTTGCTTTCTGTTTATTCAGAACTTGATGAGCATGTTTGTGGATGAAAGTCAAACATCTGAGGAACCTTCAGATCAGAGTCAAACAACTGATGACAACTCAGAGGTTGGTTCAGTTGAGGACAAGGACTCAACAGGAACAATGGGGAACTCTGACTTTTTGAGAACTTGGATTATAGAATCACTACCATGCATGTTGAAACACTTGAAGCTGGAACCTGAGGCAAAATTCCGGGTGCAGAAAGAAATTTTGAAATTTCTAGCTGTTCAGGGTTTGTTCACCGCATCCCTTGGCACAGAAGTGACCTCTTTCGAACTACAGGAGAAATTCAAGTGGCCAAAAGCTCCCACATCTAGTGCTCTTTGCATGCTTTGTATTGAACAACTGCAGTTGTTACTGGCGAATGCTCAAAAGGGAGAGGGATCTCATGGTTTGGTAAATGGTCTTGAGCCAAATGACCTTGGCTCTTATTTTATGAGGTTTCTCGGTACTTTACGCAACATCCCTTCAGTTTCTCTATTCCGTCGCCTGAGTGATGAGGATGAAGATGCATTCAAAAAACTGCAAGAGATGGAAACCAGGTTATGGAGAGAGGAAAGGAATTACGGTTTAAGTGCTGATGCAAACAAATTACATGCACTAAGGTACTTGCTCATCCAGTTGCTTTTGCAAGTGCTCCTTCGACCAGAGGAATTTACCGAAGCTGCAACTGAATTAATTATATGTTGTAAGAAAGCCTTTTCGTCTGCTGATCTACTAGGCTCCTCTGGAGATGATGAGTTGGATGGTGATGGAACAATGCAGTTAATGGATGTTCTTGTCGACACATTGCTTTCATTGCTACCACAGTCATCAGCACCCATGAGGTCTGCCATTGAGCAGGTTTTCAAGTATTTCTGTAGTGATATCACTGATGATGGGCTGATGAGAATGTTGAGGGTTGTCAAGAAAAATTTGAAACCTTCTAGACATCAGAATGCAGAGGATGACGATGATGATGAGGATGAAGATTTTCTTGATGTTGAAGAAGAAGAGGAAATTAATCAAGATGAAACTGGTGACACAGGTGACAGCGATGAACATACTGATGAATCTGAAGCCATAGATAGAGTTGGAGAAGTAGGGGCAAAACTTTCCGACGGTTCTGATGATTCTGAATCCGATGGAGGAATGGACGATGATGCGATGTTTCGAATGGATTCTTATCTTGCCCAAATCTTCAAAGAGCGAAAAAATCAGGCTGGGAGCGACACCGCTCAGTCTCAGCTTATGTTATTCAAGCTTCGTGTTCTGTCACTTCTGGAAATCTACTTGCATGAAAATCCAGGTAAGCCACATGTGTTGTTAGTGTTCTCAAATTTGGCTCAGGTATTAGTTAACCCACATACAGAAGGTAGCGAACAGCTTGAACAGCGTATATGGGGAATTTTGCAAAAGAAGATTTTCAAAGCAAAAGACTATCCAAAGGGAGAAGCAGTTCAAATGTCCACGCTTGAAAATTTGCTGGAGAAGAACCTAAAGTTGGCGTCAAAACCTAAGAAAAAGAAATCTGTTGCAAATGTATCGAAAAAGAAGCAGTTAGCATCAAAGAATCATTACAAGATGATCGATTCCCTGGGTCAGAATTCATCGTATTGGATTCTGAAGATGATCGATGCAAAAAAATTGTCCAAGCGTGAACTAAAGAAAGTATTTGATATTTTTGATAGAGTTTTGGTGGATTATTTTCATAAAAGGTCTCAGATAAAGATCGAATTTCTGAAAGAGATGATTAGAAGAAAGCCATGGATTGGGCAGCATCTTTACAGTTCCATTCTGGAAAGATGTGTCAGTACAAATTCAGAGTTTCGGCGAATTGAAGGGCTAGATCTAATAACTGAAACGATAAAATCATCCATGTCCTCTGAAAATGGGCATCATGTTGCAAAAGAACTGATGGAGAAATTTCTTCATGAACTATGCAATTTGATAAAGGAATTACTGACGCATATGCCAGAAAAGCAGGCTCGGCGATCTGATATACGGAAGTTTTGTGGCAAGATTTTTCATTTCGTTTCCTCTCTTAAAATCAACAAGTCTTTTATTTCAAGCTTGGCTCCCGAAGCTGTAGCCTTGTGTGAATCTCAACTTGGCGACCAGTTCGGTAGATTGAAGCTTCGAGAATGA 3993 40.47 FFFFFFFVPPAPTSFSAAHCRRPSLPSVPLRSSLLTGCADFLLLLKRSREVFYTMGSKKKDSNPTDEVEIEKDTSMDDVGAVVSKSLKRKMKKDKEKDGELEKGDVGIPSSTFPNSEKPMERKKKRKTYDKERKRATSEQEKQIIANFKAEDTKPSSVSVSSSGLPEFHISVFKDLASADILVRESAAEALATELLKVQEAYDKLENKDLVEGGLKLEAEKDDGLDNCAPSVRYAVRRLIRGVSSSRECARQGFALGLTALISTLPSIKVDSLLKLIVNILEVSSSMKGQEARDCLLGRLFAYGALVHSGRLTEECASDKSTSHVKEIISVLISLAAKKRYLQEPAVSIILELIEKLTPESVLNHLLEASGIREWFEAATEVGNPDALLLALKLREKISADCSIFAKLLPNPFTPSRFFSVDHLSSLANCLKESTFCQPRVHSLWPVLVNILLPDTVLQAQDSMSVTTSLKKHKKNRKSGSSEEEILINFQNFFEVIIEGALLLSSHDRKHLVFDILLLLLPRLPTIFVPTMLSYKVVQCLMDILSTKDSWLYKVGQNFVKELSEWAQHDDGRKVAVIIALQKHSSVKFDNITRTKAVQNLISEFKTESGCFLFIQNLMSMFVDESQTSEEPSDQSQTTDDNSEVGSVEDKDSTGTMGNSDFLRTWIIESLPCMLKHLKLEPEAKFRVQKEILKFLAVQGLFTASLGTEVTSFELQEKFKWPKAPTSSALCMLCIEQLQLLLANAQKGEGSHGLVNGLEPNDLGSYFMRFLGTLRNIPSVSLFRRLSDEDEDAFKKLQEMETRLWREERNYGLSADANKLHALRYLLIQLLLQVLLRPEEFTEAATELIICCKKAFSSADLLGSSGDDELDGDGTMQLMDVLVDTLLSLLPQSSAPMRSAIEQVFKYFCSDITDDGLMRMLRVVKKNLKPSRHQNAEDDDDDEDEDFLDVEEEEEINQDETGDTGDSDEHTDESEAIDRVGEVGAKLSDGSDDSESDGGMDDDAMFRMDSYLAQIFKERKNQAGSDTAQSQLMLFKLRVLSLLEIYLHENPGKPHVLLVFSNLAQVLVNPHTEGSEQLEQRIWGILQKKIFKAKDYPKGEAVQMSTLENLLEKNLKLASKPKKKKSVANVSKKKQLASKNHYKMIDSLGQNSSYWILKMIDAKKLSKRELKKVFDIFDRVLVDYFHKRSQIKIEFLKEMIRRKPWIGQHLYSSILERCVSTNSEFRRIEGLDLITETIKSSMSSENGHHVAKELMEKFLHELCNLIKELLTHMPEKQARRSDIRKFCGKIFHFVSSLKINKSFISSLAPEAVALCESQLGDQFGRLKLRE 1330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1125620 1134543 + MELO3C018559.2.1 Cme01g00159 317135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00159 1330 MobiDBLite consensus disorder prediction 952 1002 - -
Cme01g00159 1330 PANTHER MYB-BINDING PROTEIN 1A FAMILY MEMBER 153 1327 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
Cme01g00159 1330 SUPERFAMILY ARM repeat 171 955 IPR016024 -
Cme01g00159 1330 Coils Coil 188 208 - -
Cme01g00159 1330 MobiDBLite consensus disorder prediction 952 971 - -
Cme01g00159 1330 MobiDBLite consensus disorder prediction 117 140 - -
Cme01g00159 1330 MobiDBLite consensus disorder prediction 626 656 - -
Cme01g00159 1330 Pfam DNA polymerase phi 234 1047 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
Cme01g00159 1330 MobiDBLite consensus disorder prediction 972 993 - -
Cme01g00159 1330 MobiDBLite consensus disorder prediction 87 140 - -
Cme01g00159 1330 MobiDBLite consensus disorder prediction 87 104 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00159 K02331 POL5, MYBBP1A; DNA polymerase phi [EC:2.7.7.7] - csv:101209511 2245.31
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g866 . . . . . Bpe12g00719 . . Cmo19g00510 . . . . . . . Cpe15g00390 . . . . . . . . . . . . . . . . . . . Csa07g00644 . Cme01g00159 . Blo13g00201 Bda15g00482 . . . . Bma08g00031 . . . . . . Car19g00369 . . . . . . . . . Cla09g01618 Cam09g1534 Cec09g1780 Cco09g1863 . . Cre01g0781 . . Chy01g00167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007466 1 2 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00159 Cme_Chr01 FPKM 4.849684 4.268668 5.459369 4.686241 19.107796 17.927292 17.225517 4.865303 5.774183 4.742976