Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00160 ATGGCGTCTGCTGTTATAGCGAATCACGAACCCAGTTGGCCTAAGAGCAAAAGCAACGGGAGTGGAGGAGGAGGAGCGTTTATGACGAGAGTTCCGTTCTCAAACCCTAAATCTAAACCTAATATGAAAAAGAGGAAAACTAATGGTGAAATTAACAACTTCCATCAGATGGGTGAAGAAATGGGCAACGTAACTACTCTATCTCCCTCGGATAATGGGTCATCAATTGATCGTTACCATAGATCTTCGAACTTCGAGTACAGCCAATATGTGAGCTTCAATGTAACTTCGTGTTCTGGGAGGGATTTGTTTGAGCTAAGGAAACGCTTACTGGGAGAACTTGAACAAGTTAGACGAATCAAGAATCGTATTGAATCTGGGAACATTGGTTCTGGACCTAATTATTTCAAGAAATCTTCTAAGACGAAGGGACTGAACAAGCGGCCGAAGGTGCTACCTAGTTTTGGCAAAGATTTGCAGGTTCCAAATTCGTTTGAAGTTGGGAATCTGAAGAAGACTTGCGCTCAAATCTTGAACAAATTGATGAAGCAGAAGTATGGGTTGATCTTTAACAAACCGGTGGATGTGGTTGGGTTGGGTCTTCATGACTATTATGATATTATTAAGCATCCAATGGATTTAGGGACTGTGAAATCTACACTGTCTAAGAATTTATACGACTCACCTTTGGATTTTGCTGAAGATGTTAGGCTAACATTTAACAATGCCATGATGTACAACCCCAAGGGTCATGAAGTTCACGTATTGGCCGAACAGTGGTTAGCGAAATTTGAGGAAATGTTTCTTCCTGTTAGTCGGAAGCTGGGTGCACTGAAGCAGCCAGATCCCTATGAAGAGGAATTGCAATCAAGTTCATGGAATCATGTTGAGGAGGTGGAGAATGTGAAATTCAACTCAAATGGGAACAGACCAGAAGAAGTAGTAGTGCCGTCAAGCTTGACGAAGCCGCCTTCAGTTCAATCACCAGTGAGAACCCCATCACCAGTGAGAGCACCACAGGTGAAGCCTGTAAAGCAGCCGAAGCCGAAGGCAAAGGATCCCAACAAAAGGGATATGAGTTTAGAGGAGAAACACAGATTGGGAATTGGATTGCAGGGCTTGCCTCCTGAAAAGATGGATCAGGTGATACAGATTGTGAAGAAGAGAAGTGGACATTTGAGACAGGATGGGGATGAGATTGAGCTTGACATTGAAGCAGTTGATACCGAGACCCTTTGGGAACTTGACCGGCTGGTGACGAATTGGAAGAAAATGCTGAGTAAGGTCAAGCGGCAAGCTCTCATCAATGACAATACAAATACAGATTCGAATAAAGAGAATAATGAGATATCATCTGCAAATGAGATGATGAATGAGGTTAAAACAGAGGCGAAGAAGCTTAGAAAAGGGGATGTGGGTGAAGAAGATGTGGACATTGGGGATGAGGTGGTACCAATGGGTGGTTTCCCTCCTGTTGAAATTGAAAGAGATGCAGCTGCTCGTGCTAGTAGTAGTTCTGATAGCTCTAGTAGTTCAGGAAGTGATGATTCTTCCTCTTCAAGTGGTTCTGACTCAGATGGGAGCTCCTCCGATAGTGATTCAGATGGTGATGGTCAATCATAG 1623 43.44 MASAVIANHEPSWPKSKSNGSGGGGAFMTRVPFSNPKSKPNMKKRKTNGEINNFHQMGEEMGNVTTLSPSDNGSSIDRYHRSSNFEYSQYVSFNVTSCSGRDLFELRKRLLGELEQVRRIKNRIESGNIGSGPNYFKKSSKTKGLNKRPKVLPSFGKDLQVPNSFEVGNLKKTCAQILNKLMKQKYGLIFNKPVDVVGLGLHDYYDIIKHPMDLGTVKSTLSKNLYDSPLDFAEDVRLTFNNAMMYNPKGHEVHVLAEQWLAKFEEMFLPVSRKLGALKQPDPYEEELQSSSWNHVEEVENVKFNSNGNRPEEVVVPSSLTKPPSVQSPVRTPSPVRAPQVKPVKQPKPKAKDPNKRDMSLEEKHRLGIGLQGLPPEKMDQVIQIVKKRSGHLRQDGDEIELDIEAVDTETLWELDRLVTNWKKMLSKVKRQALINDNTNTDSNKENNEISSANEMMNEVKTEAKKLRKGDVGEEDVDIGDEVVPMGGFPPVEIERDAAARASSSSDSSSSSGSDDSSSSSGSDSDGSSSDSDSDGDGQS 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1135006 1137798 - MELO3C018560.2.1 Cme01g00160 317136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00160 540 MobiDBLite consensus disorder prediction 464 540 - -
Cme01g00160 540 SMART bromo_6 163 273 IPR001487 GO:0005515
Cme01g00160 540 ProSiteProfiles NET domain profile. 349 430 IPR027353 -
Cme01g00160 540 SUPERFAMILY Bromodomain 165 268 IPR036427 GO:0005515
Cme01g00160 540 Gene3D - 158 275 IPR036427 GO:0005515
Cme01g00160 540 PRINTS Bromodomain signature 185 198 IPR001487 GO:0005515
Cme01g00160 540 PRINTS Bromodomain signature 201 217 IPR001487 GO:0005515
Cme01g00160 540 PRINTS Bromodomain signature 217 235 IPR001487 GO:0005515
Cme01g00160 540 PRINTS Bromodomain signature 235 254 IPR001487 GO:0005515
Cme01g00160 540 PANTHER TRANSCRIPTION FACTOR GTE2 70 537 - -
Cme01g00160 540 MobiDBLite consensus disorder prediction 1 46 - -
Cme01g00160 540 MobiDBLite consensus disorder prediction 501 540 - -
Cme01g00160 540 Gene3D - 352 429 IPR038336 -
Cme01g00160 540 MobiDBLite consensus disorder prediction 437 456 - -
Cme01g00160 540 Pfam Bromodomain 174 258 IPR001487 GO:0005515
Cme01g00160 540 PANTHER OSJNBA0053K19.4 PROTEIN 70 537 - -
Cme01g00160 540 MobiDBLite consensus disorder prediction 302 361 - -
Cme01g00160 540 Pfam Bromodomain extra-terminal - transcription regulation 359 420 IPR027353 -
Cme01g00160 540 Coils Coil 443 470 - -
Cme01g00160 540 ProSiteProfiles Bromodomain profile. 182 254 IPR001487 GO:0005515
Cme01g00160 540 MobiDBLite consensus disorder prediction 302 334 - -
Cme01g00160 540 MobiDBLite consensus disorder prediction 346 361 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00160 - - - csv:101209352 919.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00160 Cme-Chr1:1135006 Cme07g02231 Cme-Chr7:26454316 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g868 . . . . . . Bma05g00620 . . Cmo11g01450 . . . . Sed08g2798 Cpe04g00359 . Bhi05g00968 Tan02g1117 Cmetu01g2617 Lac12g0105 Hepe02g0695 . . Cla10g00935 Cam10g0956 Cec10g0994 Cco10g0953 Clacu10g0981 Cmu10g1766 Cre10g1139 . Cone9ag1431 . . . Csa07g00643 . Cme01g00160 . Blo13g00200 Bda15g00483 . . Bpe05g00445 . Bma08g00032 . . . Cma11g01678 . Car11g01166 . . . . . . . . . . Cla09g01617 Cam09g1535 Cec09g1779 Cco09g1862 . . Cre01g0782 . . Chy01g00168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001096 3 2 3 3 1 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 8 5 1 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00160 Cme_Chr01 FPKM 121.605675 128.029694 91.635857 91.403526 84.534653 85.445801 82.876038 63.950325 68.683151 63.288872