Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00170 ATGAGTTTTGGTAGTATGTTGGAGCCGGTTAGTTGTTGCCAGAGCTCCCAGTCCCAGATTTATAGTGCAGTTAAACAAAAGAATCCTTTCAGGGCCTACTCTCATACCGTTCATCAACTTTGTGGACCTTCCTTCAACTTACATTATTCACACTCGAAGAAAGTGGCTGTTCCATCATGCACTTTTAATCACTGGAGGAATGATTATTCTTTGGTCCCTGTACTTTTTCACAATGGTGCTACTACATTAACGTTCAAAGTAGTTGGACAGAATGGGTACAATTGGTCTAATCGGAGGCCAAAACAGAGAGAAAGACTTAGAACACGTGCAGCTCTTGATGTTGCAGCTGCTGTTGACGTCATCAATGATTTAGGATTGGATACATTGACATTCCTAGCTGTGACTGTCGTAGTTGTCCCTTTATTTAGGAAAGTTAAGGCTAGCCCTATACTTGGTTTCTTCTTTGCTGGGATTGTACTTAATCAATTTGGCGTGATTAGAAATATTGTAGACGTTAAAGTTTTATCCGAATGGGGAATACTTTTCCTGCTATTTGAGATGGGTTTGGAGCTTTCATTCGCACGTTTAAAGGCTCTTGCAAGGTTTGCTTTTGGCATGGGATTGACTCAGGTCATATTGTCTACTATCGCTTTCACAGCATTTGAACTTCCCACAAATGGGGCTGTTGGAACAAAAATTTTGGAGTTCCTTTTTCACGCCAGGTCTGACTTGGTTAACATTAGAAGCGTTGATGAAGCTATTGTTATTGGTGCTGCCCTTTCTCTATCTTCTTCAGCTTTTGTTTTACAGCTTCTTGCAGAAAAAGGAGAGCTCGCGACAAGATTTGGCTCAGCAACTCTAGGAATACTTCTTCTGCAGGATATTGCTGTTGTCCCTCTCCTGGTCATACTTCCAGTTCTTGAGAGCCAGAATTTGGGCACAGAAAGTATCTGGCCAATGCTCGCTCAAGAAAGTTTGAAGGCTTTAGGTGGACTGGGTCTGCTGTCTCTTGGTGGAAAGTTGATTCTTAGGCGAGTTTTTGAGGTTGTTGCAGAAGCAAGAAGCTCAGAGGCTTTCGTTGCCCTTTGCCTGCTAACAGTTGCTGGCACTTCACTAATCACTCAGAAATTGGGCTTTAGTGATACGCTGGGAGCATTTTTGGCTGGGGCAATATTAGCAGAAACTAATTTCCGAACACAGATTGAAGCAGATATTCGGCCATTTAGGGGCTTGCTCCTTGGGTTATTCTTTGTTACCACAGGGACCTCCATTGATATGCAGCTCTTGTTCCGAGAATGGCCAAATGTTCTTGCACTTTTGGCAGGTTTAATAGCAATCAAGACCCTTATAATAACAGCAATAGGTCCACGCGTGGGCCTCACTACTCAAGAAAGTGTAAGAATAGGCTTCCTTCTATCTCAAGGAGGCGAGTTCGGATTTGTAGTGTTTTCACTGGCTAACAGGCTTGGAGTGTTACCACTCGAGTTAAACAAACTGCTCATCATTATTGTTGTCTTGTCAATGGCTCTAACTCCCTTGCTTAATGAAGCTGGACGAAAGGCATCTGAATTCATCAGCGAAAAGTACAAGACAGAGGATAAAGCTGCAGATACGGTGAACTTTGACGCTACTGAACCTGTTGTCATTGTTGGATTTGGACAAATGGGTCAGGTTCTGGCAAATTTCTTATCTACACCTTTGGCATCTGGGATAGATGGCAATACTCCTGGATGGCCATATGTAGCATTTGACATTGATCTTTCCGTAGTGAAGACGTCTAGAAAGCTTGGTTTTCCTGTTCTCTATGGAGATGGATCACGACCAGCAGTTTTGCAATCTGCAGGAATCTCTTCACCAAAAGCTGTCATGGTTATGTTCACGGAGAAGAAGGCAACAATCGATGCTGTTCAAAAGCTCCGGCTTGCGTTCCCAGCTATTCCAATTTATGCCCGAGCTAAGGATGTTGTGCATCTATTAGATTTAAAGACCGCAGGTGCAACGGATGCTATTTTGGAAGATGCTGAGACTAGTTTACAACTTGGATCGAAGCTTTTGAAAGGGCTTGGAGTCATGTCAGACCAAGTGTCTTTCCTCAGTCAAATGGTTCGAAACTCTATGGAAATACAAGCTCAAGATGCACTCGACAAATCCAATGAACAAGAGTTAGAGATTATGAAACCGCTGCAGATACGTGTCAAGGACTCAATCGAGTCCCCTGAGAGCGAACTGTCGAGACTGAACCGGGAAGATAAAACTCAAATCTTAAATGGAAAAGAGGTAGATCAAATGAAGCAAGGTACTGTTTTCCAGAAGCCTGAAGATTTAGACGGAAATGGAGTGTTATACTGTGAACTTGATACAGAGAACAACCTTTTTGAGCAAAATGTGGTAGAGCCTCCAACCCACATAACAGCCACCGATGGTCTAGAGAAGTGA 2436 43.02 MSFGSMLEPVSCCQSSQSQIYSAVKQKNPFRAYSHTVHQLCGPSFNLHYSHSKKVAVPSCTFNHWRNDYSLVPVLFHNGATTLTFKVVGQNGYNWSNRRPKQRERLRTRAALDVAAAVDVINDLGLDTLTFLAVTVVVVPLFRKVKASPILGFFFAGIVLNQFGVIRNIVDVKVLSEWGILFLLFEMGLELSFARLKALARFAFGMGLTQVILSTIAFTAFELPTNGAVGTKILEFLFHARSDLVNIRSVDEAIVIGAALSLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVILPVLESQNLGTESIWPMLAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALCLLTVAGTSLITQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMQLLFREWPNVLALLAGLIAIKTLIITAIGPRVGLTTQESVRIGFLLSQGGEFGFVVFSLANRLGVLPLELNKLLIIIVVLSMALTPLLNEAGRKASEFISEKYKTEDKAADTVNFDATEPVVIVGFGQMGQVLANFLSTPLASGIDGNTPGWPYVAFDIDLSVVKTSRKLGFPVLYGDGSRPAVLQSAGISSPKAVMVMFTEKKATIDAVQKLRLAFPAIPIYARAKDVVHLLDLKTAGATDAILEDAETSLQLGSKLLKGLGVMSDQVSFLSQMVRNSMEIQAQDALDKSNEQELEIMKPLQIRVKDSIESPESELSRLNREDKTQILNGKEVDQMKQGTVFQKPEDLDGNGVLYCELDTENNLFEQNVVEPPTHITATDGLEK 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1181913 1192261 + MELO3C018570.2.1 Cme01g00170 317146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00170 811 Gene3D - 123 523 IPR038770 -
Cme01g00170 811 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 58 760 - -
Cme01g00170 811 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 58 760 - -
Cme01g00170 811 Gene3D - 546 716 - -
Cme01g00170 811 Coils Coil 703 723 - -
Cme01g00170 811 Coils Coil 809 811 - -
Cme01g00170 811 ProSiteProfiles RCK N-terminal domain profile. 546 678 IPR003148 GO:0006813
Cme01g00170 811 Pfam TrkA-N domain 547 670 IPR003148 GO:0006813
Cme01g00170 811 Pfam Sodium/hydrogen exchanger family 131 515 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cme01g00170 811 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 546 684 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00170 Cme-Chr1:1181913 Cme06g00197 Cme-Chr6:1209989 3.48E-91 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00170 - - csv:101209266 1416.75