Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00179 ATGTCTTCGGTTGCTTACTCAATATGGAAATGTGATATTAAGAGAGGGAGGAGGACGGATGTTTGGATTAATTATGATTCTGCTACTTTGAATCTGAGTATTACTTTTACTGGGTACGAGAATAATAAAACTATATTGCAGAAACTTAATCATGATGTAGACTTTAGGTTGACTCTACCTGAATGGGTTATTTTTGGGTTTTCTGCCGCAACTGGAACTTTATATGCAACTCACAACATATATTCTTGGGATTTTGAGTCAACTCTAAATTTGAACTCTGATTCTAATTTGAACTCTGATTCTAATTTGGCCCCAAGTCCGGATCAGGGTAGCAAGAAAAGGAAGAAGAGGAAGAAAATGAATTTGGAAGAGGATATTGTGTTGGATGATAGTGAGTTTGAAAAGGGTAAAGGACCTCGGAAGTTTTCGTATAACGAATTGGCTCGAGCAACAAATAACTTTTGGGAGGATGAAAAGCTTGGTGAAGGAGGATTTGGTGGCGTTTATAAAGGTTTCTTAAGGGACTTAAATAGCTATGTTGCTGTGAAGAAAGTATCAAAAGGGTCTAGACAGGGAATAAAAGAGTACGCATCTGAGGTGAAAATCATCAGCCAGTTGAGACATAGAAACTTGGTGCAACTCATCGGTTGGTGCCATGAAAGAGGTGAGCTGTTGCTGGTTTATGAATTCATGTCAAATGGAAGTTTAGATGCCCATCTTTTTAAAGAAAACAACTTCTTAACATGGGAACATAGATACAAAGTTGCTCAAGGCGTTGCCGCTGCTTTGTTATATCTGCATGAAGAGTGGGAAAAGTGCGTGCTACATCGAGATATAAAGTCAAGTAATGTGATGTTGGATTCAGATTTCAATGCTAAGCTTGGTGATTTTGGGTTGGCTAGGCTAGTGGACCATGCAATAGGCTCACAAACAACAGTTCTTGCTGGCACAATGGGCTACATGGCTCCTGAATGTGCTATAACAGGAAGAGCCAGTAAAGAATCAGATGTCTTCAGCTTTGGGATTGTAGCATTGGAAATTGCTTGTGGAAGAAGACCCTATAACCCCAATGTAGAGGAGGGAAAAATGGTGATGGTAGAGTGGGTTTGGGAGCTTTATGGGCATGGAAGGCTTCTTGAAGCAGCCGACTCGAAACTCCATGGAAGCTTTGAGGATGAACCTGAACAACAACGACAGATTGAGTGTTTGATGGTTGTTGGCCTATGGTGTGCTCATCCAGATATAAATTGTAGACCATCAATAAGACAAGCAATTCATGTGATGAACTTTGAAGCCCCATTACCCGTTCTTCCCTTACAGTTCCCTACACTTGCTTATCATCCTCTTTCAGTGAACAGATCAATTATTTCTTCTTCATTTTCATCAACACAAGATAGTGTTGTTTCTCAAATTGGTAATGGCTTCAACTCTGCTAATGTCTTAACTAGTTCTTCACAGGAGACTACAACTTCTTCAACTTCTTTTTCTGCATCAACTTCACTTTTGGATACACGGTAA 1518 39.79 MSSVAYSIWKCDIKRGRRTDVWINYDSATLNLSITFTGYENNKTILQKLNHDVDFRLTLPEWVIFGFSAATGTLYATHNIYSWDFESTLNLNSDSNLNSDSNLAPSPDQGSKKRKKRKKMNLEEDIVLDDSEFEKGKGPRKFSYNELARATNNFWEDEKLGEGGFGGVYKGFLRDLNSYVAVKKVSKGSRQGIKEYASEVKIISQLRHRNLVQLIGWCHERGELLLVYEFMSNGSLDAHLFKENNFLTWEHRYKVAQGVAAALLYLHEEWEKCVLHRDIKSSNVMLDSDFNAKLGDFGLARLVDHAIGSQTTVLAGTMGYMAPECAITGRASKESDVFSFGIVALEIACGRRPYNPNVEEGKMVMVEWVWELYGHGRLLEAADSKLHGSFEDEPEQQRQIECLMVVGLWCAHPDINCRPSIRQAIHVMNFEAPLPVLPLQFPTLAYHPLSVNRSIISSSFSSTQDSVVSQIGNGFNSANVLTSSSQETTTSSTSFSASTSLLDTR 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1254289 1256569 + MELO3C018578.2.1 Cme01g00179 317155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00179 505 PANTHER - 112 486 - -
Cme01g00179 505 PANTHER - 1 98 - -
Cme01g00179 505 ProSitePatterns Protein kinases ATP-binding region signature. 160 184 IPR017441 GO:0005524
Cme01g00179 505 Pfam Protein kinase domain 156 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00179 505 Gene3D Phosphorylase Kinase; domain 1 139 230 - -
Cme01g00179 505 ProSiteProfiles Protein kinase domain profile. 154 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00179 505 SMART serkin_6 154 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00179 505 Gene3D - 1 136 - -
Cme01g00179 505 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 112 486 - -
Cme01g00179 505 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 1 98 - -
Cme01g00179 505 ProSitePatterns Legume lectins alpha-chain signature. 59 68 IPR000985 -
Cme01g00179 505 CDD STKc_IRAK 160 429 - -
Cme01g00179 505 Pfam Legume lectin domain 3 96 IPR001220 GO:0030246
Cme01g00179 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Cme01g00179 505 MobiDBLite consensus disorder prediction 96 119 - -
Cme01g00179 505 MobiDBLite consensus disorder prediction 486 505 - -
Cme01g00179 505 Gene3D Transferase(Phosphotransferase) domain 1 231 443 - -
Cme01g00179 505 SUPERFAMILY Concanavalin A-like lectins/glucanases 7 177 IPR013320 -
Cme01g00179 505 SUPERFAMILY Protein kinase-like (PK-like) 139 466 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00179 Cme-Chr1:1254289 Cme06g01713 Cme-Chr6:19276032 1.43E-168 dispersed
Cme01g00179 Cme-Chr1:1254289 Cme01g00183 Cme-Chr1:1269220 6.24E-148 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64588 PF00069 Pkinase 1.20E-49 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00179 - - csv:101208539 871.692