Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00183 ATGGACAAATCCGGTAGCTCCACCAATTTCTCCTTCTCTTCTTTCCCCGATTCCTCCAATATCAGTTTCGTCAACAGTGCCTCAAGAAGCGTAGTTTTCGATCATCCTTCTCTCCGGCTAACGGACAACCAGATTGGCGGCAGCGTCTTCAACAGCACGGGAAGAGCGTACTTCTCTGAGCCGATTCAACTATGGGATCCAGTTACTAACATATCTTCTGATTTCACTACTTATTTTGAGTTTGTGATCTCGTTTCCTAACGGGCGGATCTCGAACGCCTCTGCCGGTGGAATTGCCTTCTTCATAGCTTCCGAGGATTCCGCATCGCCTCCTTTGAATTCCAGCGGCGGATGGCTAGGGTTGTTCAATCAATCCAACGACGGTGATCCGTCGAATCAGGTCGTCGCCATTGAGTTCGATATCTTTAAAGATCCATGGGATCCTAGCGATAATCATGTTGGTGTGGACGTGAATTCCATCGTCTCCATCGCTAATCGTACTTGGAGTAATACAATGGTTTCTGGAGATATTTTGGGTGCTCGAATCACTTACAATGGAACATTGGGGAGATTGGATGTTACGCTGAAAGATCCTCAGGTTCCAAATGAGTCGATTACGTTGAATCTTACTGATGTTCCCATTGATTTGAAGGAATTTCTTCCGGCTAGAGTGATCGTTGGCTTTTCTGCATCAACAGGTCAGTCAATCCCAATTCAAGCAATTAGAAGTTGGAACTTCACATCGAGTTTGGATTTGATTGTTGTAACTGGAATTGTTGAGGGTAAATCCAAATTGTGGATTGTGGGTCTGGTTATTGGATTGGTTGGCTTGACTTTTCTGTCTGGATTCTTATTTGTTGTTTGGTGGAGAAGAACAAAGAGGAAACAGAGAGAAAAAGAAGACGGAGATGGTGGTGATGATGATGATGATTTTGGTGATGAGGAAATTAGCATGGTGGAGAATGTTGTTGATGAAGAAGAGTTCATCAAAGGAACAGGACCAAAGAGATTTGCTTATAAGGAACTTGTCAAAGCAACCAACAATTTTTCTCAAGATGGAAAGCTTGGACAAGGGGGTTTTGGTGGTGTTTACAAAGGCTTTGTGACAGAACTAAACATGGAAATAGCAGCAAAGAAGATATCAAGCACTTCCAAGCAAGGAAAAAAGGAGTACATCTCTGAAGTCAACATTATAAGCCGTTTGCGACATCGAAATCTTGTTCAACTTGTCGGATACAGTCACGAACGCGGCCATTTCGTACTCGTTTATGAGTACATGCAGAATGGAAGCTTAGATTCCCATTTGTTTGGGAAGAAATTACGCCTCTCTTGGCCTGTAAGATATAGGATAGCCCAAGGAATAGCCTCTGCCTTGCTCTACCTCCACGAGGAATGGGAACAATGCGTTGTCCACAGAGATATCAAATCAAGCAATGTGATGTTAGACTCAAACTTCAACGCGAAAGTTGGCGATTTCGGTTTAGCCAGACTTGTTGACCATGGTCTCCGCTCGCCAACAACAATTGTAGCAGGCACGATGGGCTACCTAGCTCCAGAGTCCCTCCTCATGAACAAAGCGAGTAAGGAATCAGATGTGTTTAGTTTTGGGGTGGTGGCATTGGAGATAGCCTGTGGGAGAAAAGCAGTGGAACACAATGAAGAAGAAGAAGAAAAGATTAGTTTGGTGAGTTGGGTTTGGGGATTGTATGGACAAGGAAGACTTCTTGAAGGAGTTGATAAGGCATTGAATGGAGAGTTCAATCAAGAAGAAATGGTGCGTTTAATGACTGTGGGGCTATGGTGTGCACACCCAAATCATAACCTAAGAGCTTCCATAAGGCAAGCAATTCAAGTGCTGAACTTCGAGGCCCCTTTGCCTAAACTCCCAACACAAATGCCTGTGCCTATGTACTATGCTCTCACAGCTCCCAATGAAAACCCTGTTTCCTATACTTACTCAACCAACACAAGCTCTCAAGTATCATTGCAATCTGATACATCTCAGCCTGTTTCCACCAAATCATCCTTGTAA 2031 43.92 MDKSGSSTNFSFSSFPDSSNISFVNSASRSVVFDHPSLRLTDNQIGGSVFNSTGRAYFSEPIQLWDPVTNISSDFTTYFEFVISFPNGRISNASAGGIAFFIASEDSASPPLNSSGGWLGLFNQSNDGDPSNQVVAIEFDIFKDPWDPSDNHVGVDVNSIVSIANRTWSNTMVSGDILGARITYNGTLGRLDVTLKDPQVPNESITLNLTDVPIDLKEFLPARVIVGFSASTGQSIPIQAIRSWNFTSSLDLIVVTGIVEGKSKLWIVGLVIGLVGLTFLSGFLFVVWWRRTKRKQREKEDGDGGDDDDDFGDEEISMVENVVDEEEFIKGTGPKRFAYKELVKATNNFSQDGKLGQGGFGGVYKGFVTELNMEIAAKKISSTSKQGKKEYISEVNIISRLRHRNLVQLVGYSHERGHFVLVYEYMQNGSLDSHLFGKKLRLSWPVRYRIAQGIASALLYLHEEWEQCVVHRDIKSSNVMLDSNFNAKVGDFGLARLVDHGLRSPTTIVAGTMGYLAPESLLMNKASKESDVFSFGVVALEIACGRKAVEHNEEEEEKISLVSWVWGLYGQGRLLEGVDKALNGEFNQEEMVRLMTVGLWCAHPNHNLRASIRQAIQVLNFEAPLPKLPTQMPVPMYYALTAPNENPVSYTYSTNTSSQVSLQSDTSQPVSTKSSL 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1269220 1271760 - MELO3C018582.2.1 Cme01g00183 317159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00183 676 Gene3D - 6 257 - -
Cme01g00183 676 ProSitePatterns Protein kinases ATP-binding region signature. 355 379 IPR017441 GO:0005524
Cme01g00183 676 SMART serkin_6 349 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00183 676 SUPERFAMILY Concanavalin A-like lectins/glucanases 7 251 IPR013320 -
Cme01g00183 676 PANTHER - 6 676 - -
Cme01g00183 676 ProSiteProfiles Protein kinase domain profile. 349 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00183 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Cme01g00183 676 SUPERFAMILY Protein kinase-like (PK-like) 333 659 IPR011009 -
Cme01g00183 676 CDD lectin_legume_LecRK_Arcelin_ConA 20 250 IPR001220 GO:0030246
Cme01g00183 676 Gene3D Transferase(Phosphotransferase) domain 1 426 641 - -
Cme01g00183 676 Pfam Legume lectin domain 8 249 IPR001220 GO:0030246
Cme01g00183 676 Gene3D Phosphorylase Kinase; domain 1 334 425 - -
Cme01g00183 676 Pfam Protein kinase domain 350 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g00183 676 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 6 676 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00183 - - - cmo:103495369 1281.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00183 Cme-Chr1:1269220 Cme06g01713 Cme-Chr6:19276032 0 dispersed
Cme04g02247 Cme-Chr4:29573471 Cme01g00183 Cme-Chr1:1269220 8.87E-111 dispersed
Cme01g00179 Cme-Chr1:1254289 Cme01g00183 Cme-Chr1:1269220 6.24E-148 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g907 . . . . . . . . Cmo19g00505 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00683 Csa07g00618 . Cme01g00183 . . . . . . . . . . . . Cma19g00488 . Car19g00365 . . . . . . . . . . . . . . . . . . Chy01g00191 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000150 2 7 3 2 2 5 6 4 4 9 8 5 7 10 9 7 6 7 5 4 9 4 4 5 5 9 3 2 3 2 158
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64589 PF00069 Pkinase 1.50E-48 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00183 Cme_Chr01 FPKM 16.748631 19.05718 9.539412 8.65237 0.979919 1.33191 0.953446 4.523566 3.920108 4.815217