Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00184 ATGTTGCAGTCTTCGATTTGGCGAGTGAAAAAATTGAGTGTTCTGAGGCCTCAGATCTTTGCTCTTGGAAATTTTCGTTTCTCCACTTTTGCTGAACCGTCTTCAAAGCCTAATCCTCCGAGGGTTCCGAATCTCATAGGAGGGACTTTTGTTGATTCTCAATCCTCAGCATTTATAGATGTCATAAACCCAGCAACGCAAGAAGTTGTTTCTCAAGTTCCATTGACCACAAAGGATGAATTTAAAGCTGCAGTGTCTGCAGCAAAGCAGGCTTTTCCTGCATGGCGTAATACTCCAGTTACAACTCGGCAACGAATTATGTTCAAGCTTCAAGAACTTATTAGCCGAGATATAGACAAACTTGCTCTAAATATTACCACGGAACAAGGAAAAACATTAAAGGACGCGCATGGAGATGTATTCCGTGGGCTAGAGGTTGTGGAACATGCATGTGGAATGGCATCTCTGCAAATGGGGGAGTATGTCTCTAATGTGTCACATGGAATTGATACCTATAGCATCAGAGAGCCTCTTGGTGTTTGTGCTGGGATTTGTCCGTTCAATTTTCCAGCAATGATCCCCCTTTGGATGTTCCCAATTGCTGTTACATGTGGAAATACCTTTGTTTTGAAGCCTTCAGAAAAAGATCCTGGGGCTTCTATAATCCTTGCAGAGTTAGCAATGGAGGCTGGATTGCCTAATGGTGTCCTAAATGTGGTTCATGGTACTAATGATGTTGTTAATGCCATCTGTGATGATGAAGATATAAAAGCAATATCATTCGTCGGTTCAAACATTGCGGGCATGCATATATATTCAAGGGGATCAGCTAAAGGAAAACGTGTTCAGTCCAATATGGGTGCAAAAAACCATGCCATTGTCTTGCCTGATGCTGGCATAGATGCTACTTTGAATGCTTTGGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGATGCATGGCACTTAGTACAGTTGTCTTTGTTGGAGACTCCAAGTTGTGGGAGGATAAACTTGTAGAACGTGCCAAAGCTCTAAAAGTAAACTCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGATAGGATTCACAGATTGGTTCAATCTGGCATTGATAGTGGAGCCAGACTACTGCTAGATGGGAGAAATATAGTGGTTCCTGGATACGAGCATGGAAATTTTATTGGCCCTACTATCTTAACAGATGTGACACCGGACATGGAGTGCTACAAGGAAGAAATATTTGGCCCAGTTCTGCTTTGCATGCAGGCTGAAAGTTTAGAAGACGCCATTAGCATCGTTAATGGAAATAGGTATGGCAATGGAGCTTCCATATTCACCACATCTGGGATAGCCGCGAGGAAGTTTCAAACGGATATTGAAGCTGGACAGGTTGGGATCAACGTTCCAATTCCAGTTCCCTTGCCTTTCTTCTCGTTCACCGGCTCCAAGGCCTCTTTTGCTGGGGATCTCAACTTTTATGGGAAGGCAGGGGTGAACTTCTTCACACAGATAAAAACAGTGACACAACAATGGAAAGACTCAACTGGAGGGAGTGCAATCAATCTTGCAATGCCAACCTCTTTGAAGTCATAG 1614 43.49 MLQSSIWRVKKLSVLRPQIFALGNFRFSTFAEPSSKPNPPRVPNLIGGTFVDSQSSAFIDVINPATQEVVSQVPLTTKDEFKAAVSAAKQAFPAWRNTPVTTRQRIMFKLQELISRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGASIILAELAMEAGLPNGVLNVVHGTNDVVNAICDDEDIKAISFVGSNIAGMHIYSRGSAKGKRVQSNMGAKNHAIVLPDAGIDATLNALVAAGFGAAGQRCMALSTVVFVGDSKLWEDKLVERAKALKVNSGTEPDADLGPVISKQAKDRIHRLVQSGIDSGARLLLDGRNIVVPGYEHGNFIGPTILTDVTPDMECYKEEIFGPVLLCMQAESLEDAISIVNGNRYGNGASIFTTSGIAARKFQTDIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFFTQIKTVTQQWKDSTGGSAINLAMPTSLKS 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1275062 1282829 + MELO3C018583.2.1 Cme01g00184 317160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00184 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 312 323 IPR016160 GO:0016491
Cme01g00184 537 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 15 534 - -
Cme01g00184 537 SUPERFAMILY ALDH-like 37 519 IPR016161 GO:0016491
Cme01g00184 537 CDD ALDH_F6_MMSDH 42 518 IPR010061 GO:0004491
Cme01g00184 537 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 15 534 IPR010061 GO:0004491
Cme01g00184 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 287 487 IPR016163 GO:0016620
Cme01g00184 537 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 44 518 IPR010061 GO:0004491
Cme01g00184 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 495 IPR016162 GO:0016491
Cme01g00184 537 Pfam Aldehyde dehydrogenase family 50 514 IPR015590 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00184 K00140 mmsA, iolA, ALDH6A1; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] - csv:101204924 1032.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00184 Cme-Chr1:1275062 Cme08g00717 Cme-Chr8:4771511 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme02g01337 . 70 566 Aldehyde Dehydrogenase Gene Family AT3G24503 70.9 1.1e-210 729.6
Cme02g01959 . 49 554 Aldehyde Dehydrogenase Gene Family AT3G24503 53.3 8.7e-155 543.9
Cme05g01785 . 53 334 Aldehyde Dehydrogenase Gene Family AT3G24503 56.9 5.8e-90 328.6
Cme02g01959 . 4 554 Aldehyde Dehydrogenase Gene Family AT3G48000 78.0 5.5e-256 880.2
Cme02g01337 . 82 566 Aldehyde Dehydrogenase Gene Family AT3G48000 55.1 1.1e-160 563.5
Cme05g01785 . 1 334 Aldehyde Dehydrogenase Gene Family AT3G48000 77.6 4.1e-150 528.5
Cme02g01959 . 46 403 Aldehyde Dehydrogenase Gene Family AT1G23800 76.3 2.0e-165 578.9
Cme05g01785 . 1 334 Aldehyde Dehydrogenase Gene Family AT1G23800 77.9 1.7e-148 522.7
Cme02g01337 . 82 410 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 1.6e-101 366.7
Cme07g00835 . 23 519 Aldehyde Dehydrogenase Gene Family AT4G34240 62.0 4.0e-182 634.8
Cme07g00834 . 7 431 Aldehyde Dehydrogenase Gene Family AT4G34240 54.6 2.8e-143 505.8
Cme07g00835 . 107 517 Aldehyde Dehydrogenase Gene Family AT1G44170 72.5 2.5e-179 625.2
Cme07g00834 . 80 429 Aldehyde Dehydrogenase Gene Family AT1G44170 72.0 2.1e-149 525.8
Cme05g00154 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 51.5 2.3e-116 416.0
Cme07g01699 . 1 464 Aldehyde Dehydrogenase Gene Family AT4G36250 61.4 3.0e-176 615.1
Cme05g00154 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.8 1.3e-158 556.6
Cme11g01643 . 37 540 Aldehyde Dehydrogenase Gene Family AT1G79440 76.6 1.4e-232 802.4
Cme01g00184 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.3 1.2e-238 822.8
Cme08g00717 . 196 641 Aldehyde Dehydrogenase Gene Family AT2G14170 59.3 1.4e-159 560.1
Cme02g01936 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 80.8 3.2e-250 860.9
Cme02g01936 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.1 3.1e-253 870.9
Cme05g01834 . 79 537 Aldehyde Dehydrogenase Gene Family AT2G24270 91.1 6.7e-248 853.2
Cme12g01755 . 21 492 Aldehyde Dehydrogenase Gene Family AT5G62530 76.8 1.4e-222 769.2
Cme11g02077 . 1 588 Aldehyde Dehydrogenase Gene Family AT3G66658 75.3 2.8e-269 924.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004517 1 1 3 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00184 Cme_Chr01 FPKM 19.370668 21.332869 23.995104 20.04845 13.351798 11.815732 12.681547 14.93256 13.318317 15.005284