Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00203 ATGGACCACAACGGCGGCGGTGGGAATAGGGCGGAGGCGTTGCGGTGGCTGAGCATAGCGGAGAAGCTTCTGGCGGCGCGTGATTTTTATGGAACTAGGAGCTTTGCGATCCGGGCTAGGGAATCGGACCCGATAGTGCTGGAGGCGGCGGATAGGGTAATTGCTGTGGCGGATACACTGCTGGCGGCGGAGGGACGGATCAACAATCAGTATGATTGGTATAGTGTTTTGCAAATTTCACAGCCGACTCAGAGCATTGAGCTAATTGCTACTCAGTATCGGCGACTAGCGCTTCTTCTTCACCCGGAGGCCAATAGAGTGGCTTTTGCGGATCACGCTTTCAGGCTTGTGTCTGATGCATGGTGTGTGCTTTCGAATCCGTTGAGAAAAGCGTTGTATGATAACGACTATCTTATGTGCTCCAACAAGTTTAGCCCTGGAACGACTGGGTCGAGTCAAAAACCGAAGTCCCCGCCGCAGCAGCCACAATTTCCGCAGCCGGTTAGAACTAGTCCGAGGAAGGAGACTAGGATGACGGTAGAGGAGCCTCAGCATCAGGAGCGGCCACCGCCGCCGCCACCGCCGCCACAGCCGGAACGCCAGCAACCGCCACCGCCACAACCTCCGGTGCAGCCGCCACAGCCACCACCTCCTCAACCATCTCCTCACCGGCCACAGCAGCAGGAAGATCCGCAGCAGCAGCAGCAATTTGTAAGAAAAACCCCCAAATCGATGAATGCTAAATTAACCTTAGAGGAAGAGAGGCCAAATGTCAGTGATGTCAATGCTTCAACTCAGGAAGCTACTCAGCAGCACATTGATTCAAGTCCTCCCTCACGGGAGGCTGAGTCTACTTTACCGACTGAGTCCACTTTGCCGACTGAGTCGAACATTCCGAGTTTCTGGACTGCTTGTCCATATTGTTATAATCTGTATGAATACCCTAAGGGTTACGAGGATTGTGTGCTTAGGTGCCAGAATTGTTCCAAGGCATTTCAAGCACTGGTTATTCCTTCACCGCCGGTAGCTGATAGTGCTTCTACCTTCTGCTGCTGGGGGTTTTTCCCACTTGGGGTTTCTCCCAATGCTAAAGGGGCAGTGGGATCTGTAGCCTGGTCGCCTTTTTCAGCTATGTTCTCCTGTCCTTTGCCTGGTAAGGTGGGAATAAAGCCGGGGAAAACTAGAAATGTTAAACCCGTCAAGAAATCTACACCAAAATTTGTTTGTGAAGAGGATGATATTTATGTCGAAGTTTCCGAACCAAGTGACAGTTCTGATGAAGAGTGGGGAAGGATAAGTAAGAAGAAGAAGCCTAAGAGGGGTTTGGCTAGTAGAATTGATAAGAGAGCACATTCTGAGAGCTCACTCAAAGGAAACCAAGGCAATTTAGGGAATGGAAACACAGATGAAGTTGTGAATATGAATGGGCAGTTTGGAGAACAAAACGGGTTGGTGAGGTTCGGTTTGTCAAACGCCACAAAGAGTGAGCCCAGTAAGAAGGCTGTGGCAGCCGCAGGGGGTACTGGGAAGAAGCATAAAGGGAAAGGGCCAAAGGAACTAGGTAAGTTGGATTTGAATGTGGAATTCAGCAATGAGGTTGAAGAACCCGCCACAGGCGTAAGTGAAGGACATGGGGAGGATAACATTGAAGGAATTGGGTTCTTTGAGGGCCTTGATGAATTTTTGAGTAGTCTGCCAATACTTAATGCTGTGGCCGATGATAAGGTCAAAGCTAGTTAG 1740 50.29 MDHNGGGGNRAEALRWLSIAEKLLAARDFYGTRSFAIRARESDPIVLEAADRVIAVADTLLAAEGRINNQYDWYSVLQISQPTQSIELIATQYRRLALLLHPEANRVAFADHAFRLVSDAWCVLSNPLRKALYDNDYLMCSNKFSPGTTGSSQKPKSPPQQPQFPQPVRTSPRKETRMTVEEPQHQERPPPPPPPPQPERQQPPPPQPPVQPPQPPPPQPSPHRPQQQEDPQQQQQFVRKTPKSMNAKLTLEEERPNVSDVNASTQEATQQHIDSSPPSREAESTLPTESTLPTESNIPSFWTACPYCYNLYEYPKGYEDCVLRCQNCSKAFQALVIPSPPVADSASTFCCWGFFPLGVSPNAKGAVGSVAWSPFSAMFSCPLPGKVGIKPGKTRNVKPVKKSTPKFVCEEDDIYVEVSEPSDSSDEEWGRISKKKKPKRGLASRIDKRAHSESSLKGNQGNLGNGNTDEVVNMNGQFGEQNGLVRFGLSNATKSEPSKKAVAAAGGTGKKHKGKGPKELGKLDLNVEFSNEVEEPATGVSEGHGEDNIEGIGFFEGLDEFLSSLPILNAVADDKVKAS 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1451743 1453670 + MELO3C018602.2.1 Cme01g00203 317179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00203 579 MobiDBLite consensus disorder prediction 502 523 - -
Cme01g00203 579 MobiDBLite consensus disorder prediction 455 469 - -
Cme01g00203 579 MobiDBLite consensus disorder prediction 146 294 - -
Cme01g00203 579 ProSiteProfiles dnaJ domain profile. 72 137 IPR001623 -
Cme01g00203 579 PANTHER BNAANNG15130D PROTEIN 1 579 - -
Cme01g00203 579 MobiDBLite consensus disorder prediction 185 225 - -
Cme01g00203 579 Pfam DnaJ domain 72 134 IPR001623 -
Cme01g00203 579 CDD DnaJ 72 126 IPR001623 -
Cme01g00203 579 MobiDBLite consensus disorder prediction 257 294 - -
Cme01g00203 579 Gene3D DnaJ domain 68 137 IPR036869 -
Cme01g00203 579 MobiDBLite consensus disorder prediction 419 469 - -
Cme01g00203 579 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 579 - -
Cme01g00203 579 SMART dnaj_3 71 129 IPR001623 -
Cme01g00203 579 MobiDBLite consensus disorder prediction 226 243 - -
Cme01g00203 579 SUPERFAMILY Chaperone J-domain 66 135 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00203 - - - csv:101202983 642.499
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00203 Cme-Chr1:1451743 Cme01g00546 Cme-Chr1:4071899 9.42E-22 dispersed
Cme01g00203 Cme-Chr1:1451743 Cme04g00239 Cme-Chr4:1883858 1.14E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g955 . . . . . . . Bma12g00378 Cmo19g00493 Cmo11g01464 . . . . . Cpe04g00370 Cpe15g00374 Bhi05g00935 . . . . . . . . . . . . . . . . . . . . Cme01g00203 . . Bda15g00491 . . . . . . . . Cma11g01667 Cma19g00476 Car11g01178 Car19g00351 . . . . . . . . . Cla09g01575 Cam09g1578 Cec09g1732 Cco09g1794 . . Cre09g1623 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008143 2 1 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 2 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00203 Cme_Chr01 FPKM 2.865135 2.903394 10.300782 9.591399 16.368395 18.82863 16.53404 9.896333 10.265572 11.841022