Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00204 ATGGATGAAGAATACGACGTTATTGTTCTCGGTACCGGCCTTAAGGAATGCATTCTCAGCGGCCTTCTCTCCGTCGACGGTCTTAAAGTACTTCATATGGATAGAAATGATTATTATGGAGGAGCATCAACCTCTCTCAATCTCATACAGCTTTGGAAGCGTTTCAGGGGGAATGATAAGCCTCCAGAACAGTTGGGCTTGAGCAAAGAGTACAATGTTGATATGATACCCAAGTTCATGATGGCCAATGGCGGTTTGGTTCGAGTTCTCATTCACACAGATGTTACCAAATACCTACACTTCAAGGCTGTTGACGGTAGTTTTGTGTATAACAAAGGAAAGATTTACAAAGTTCCAGCTACTGATGTTGAAGCTCTGAAGTCACCACTCATGGGACTTTTTGAGAAACGTCGTGCTCGAAAGTTCTTCATTTATGTCCAAGATTATGAAGAGAGTGATCCAAAATCTCATGAAGGTTTAGATTTAAGCAAAGTTACAGCTAGAGAACTCATCACGAAGTATGGACTAGAAGATGATACAATTGACTTTATTGGACATGCTTTGGCACTACATTTTGACGATAGCTATTTGAATGGGCCAGCATTGGATTTTGTGAAGAGAATGAAGAATCTTTGGCACGCTTCCAAGGAGGATCTCCCTATATCTATCCACTCTACGGACTTGGAGAGTTGCCTCAGGCATGCATTTGCCCGTTTAAGTGCCGTTTATGGTGGAACTTACATGCTCAACAAGCCAGAATGCAAGGTTGAGTTTGATGGTGACGGTAAAGCTTATGGTGTAACTTCCGAAGGAGAAACTGCTAAATGCAAAAAAGTTGTTTGTGACCCATCGTATCTGCCAGACAAGGTTAAAAAGGTTGGAAAGGTAGCCCGTGCAGTTTGTATAATGAGTCATCCAATCCCAGACACCAATGATTCTCATTCAGCTCAGGTTATCCTGCCGCAAAAGCAACTTGGCCGTAAATCGGACATGTACCTCTTCTGTTGTTCATATGCACACAACGTTGCTCCAAAAGGAAAATTCATTGCTTTCGTTTCGACGGAAGCAGAGACCGATAATCCTGAAGTAGAATTGAAGCCTGGGATCGACCTCCTTGGACCCGTTGATGAGATATTCTATGAAACTTACGACAGATATATTCCCATAAATAACCATGAAACAGACAGTTGCTTCATTTCTACGAGTTACGACGGAAGTACCCATTTTGAGTCGACAGTGAAAGATGTGCTTGCCATGTACAGCAATATCACTGGAAAGGCAGTTGATCTTTCTGTGGACCTCAGTGCCGCAAGTGCTGCTTCCGAAGAATGA 1332 42.72 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGASTSLNLIQLWKRFRGNDKPPEQLGLSKEYNVDMIPKFMMANGGLVRVLIHTDVTKYLHFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQDYEESDPKSHEGLDLSKVTARELITKYGLEDDTIDFIGHALALHFDDSYLNGPALDFVKRMKNLWHASKEDLPISIHSTDLESCLRHAFARLSAVYGGTYMLNKPECKVEFDGDGKAYGVTSEGETAKCKKVVCDPSYLPDKVKKVGKVARAVCIMSHPIPDTNDSHSAQVILPQKQLGRKSDMYLFCCSYAHNVAPKGKFIAFVSTEAETDNPEVELKPGIDLLGPVDEIFYETYDRYIPINNHETDSCFISTSYDGSTHFESTVKDVLAMYSNITGKAVDLSVDLSAASAASEE 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1458237 1462929 + MELO3C018603.2.1 Cme01g00204 317180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00204 443 PANTHER GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1 440 - -
Cme01g00204 443 PRINTS Rab GDI protein signature 75 88 IPR000806 GO:0005093|GO:0015031
Cme01g00204 443 PRINTS Rab GDI protein signature 16 28 IPR000806 GO:0005093|GO:0015031
Cme01g00204 443 PRINTS Rab GDI protein signature 182 196 IPR000806 GO:0005093|GO:0015031
Cme01g00204 443 PRINTS Rab GDI protein signature 125 140 IPR000806 GO:0005093|GO:0015031
Cme01g00204 443 PRINTS Rab GDI protein signature 278 292 IPR000806 GO:0005093|GO:0015031
Cme01g00204 443 PRINTS Rab GDI protein signature 379 398 IPR000806 GO:0005093|GO:0015031
Cme01g00204 443 PRINTS Rab GDI protein signature 400 420 IPR000806 GO:0005093|GO:0015031
Cme01g00204 443 PRINTS Rab GDI protein signature 321 337 IPR000806 GO:0005093|GO:0015031
Cme01g00204 443 PRINTS Rab GDI protein signature 346 364 IPR000806 GO:0005093|GO:0015031
Cme01g00204 443 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 57 385 - -
Cme01g00204 443 Gene3D - 2 427 IPR036188 -
Cme01g00204 443 SUPERFAMILY FAD/NAD(P)-binding domain 1 354 IPR036188 -
Cme01g00204 443 SUPERFAMILY FAD/NAD(P)-binding domain 388 431 IPR036188 -
Cme01g00204 443 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 118 222 - -
Cme01g00204 443 PRINTS Rab GDI/REP protein family signature 135 150 IPR018203 GO:0005092|GO:0007264
Cme01g00204 443 PRINTS Rab GDI/REP protein family signature 24 41 IPR018203 GO:0005092|GO:0007264
Cme01g00204 443 PRINTS Rab GDI/REP protein family signature 86 102 IPR018203 GO:0005092|GO:0007264
Cme01g00204 443 PRINTS Rab GDI/REP protein family signature 6 24 IPR018203 GO:0005092|GO:0007264
Cme01g00204 443 PRINTS Rab GDI/REP protein family signature 69 86 IPR018203 GO:0005092|GO:0007264
Cme01g00204 443 PRINTS Rab GDI/REP protein family signature 228 249 IPR018203 GO:0005092|GO:0007264
Cme01g00204 443 Pfam GDP dissociation inhibitor 1 431 IPR018203 GO:0005092|GO:0007264
Cme01g00204 443 PANTHER RAB GDP-DISSOCIATION INHIBITOR 1 440 IPR018203 GO:0005092|GO:0007264
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00204 K17255 GDI1_2; Rab GDP dissociation inhibitor - csv:101207318 788.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00204 Cme-Chr1:1458237 Cme05g00877 Cme-Chr5:11691267 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g966 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00705 . . Cme01g00204 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00218 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001825 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 4 4 2 2 2 2 1 2 1 0 5 2 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00204 Cme_Chr01 FPKM 12.973464 15.696102 5.031915 4.45415 3.119064 2.570151 2.462085 0.123339 0.0 0.0