Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00208 ATGGAGAATAGTAATACCTCAATCACTGACGCTGCAAATAGAGAGCTCAACGATGGAAAAGACGCCACTAATAATGGCTCCGTCTGTGGTTACGACTCGCTTCATCAACTCCTTGCTGCAAATCTCAAACCTCACATATTTCAGGAAGTTAGCCGGTTGCTGTTAGGGCTCAACTGTGGAAAGCCACTTCAAACTCTTTCTCTTGCAGAACCTGTGAATAGTCTTTCTCTAGAGCATGATTTTGACCTCCAGGCTTTCCGCTTTCATGCTGACAAGGAATCAGTGAGAGAACCTCGAATAGTAAGGGTGGGTCTTATTCAAAATTCTATTGCTCTTCCTACAACTGCCCCCTTTTTAGACCAAAAGAGGGCTATTCTTGAGAAAGTGAAGCCAATTATTGATGCAGCAGGTGCTTCTGGAGTCAACATATTATGCTTGCAAGAAGCATGGATGATGCCATTTGCCTTTTGTACCCGTGAAAAGCGGTGGTGTGAATTTGCAGAGCCAATTGACGGGGAATCTACACGGTTTCTTCAGGATCTTGCAATAAGATACAACATGGTCATTGTAAGTTCAATTCTTGAGAGAGATGTTAGTCATGGAGATACTTTGTGGAATACTGCTGTTGTTATTGGTAATCATGGAAACATAATTGGGAAGCATCGCAAGAACCATATACCAAGAGTTGGTGATTTTAACGAGAGCACTTATTACATGGAAGGGAACACCGGCCATCCTGTGTTTGAGACAGCCTATGGGAAAATTGGAATAAATATATGTTACGGGAGGCACCACCCTTTAAACTGGTTAGCTTTCGGTTTAAATGGTGCCGAGATCGTTTTCAACCCTTCTGCAACTGTTGGTGAACTTAGTGAACCAATGTGGCCTATTGAGGCCCGAAATGCTGCAATAGCAAATAGTTATTTTGTCGGATCAATCAATCGTGTTGGGACCGAGATTTTCCCAAATCCATTCACTTCGGGCGATGGGAAACCACAACATACAGATTTTGGTCACTTCTACGGGTCCAGCCATTTCTCTGCACCAGATGCATCTTGCACTCCCTCACTCTCCCGTTTCCGGGATGGTTTACTAATCTCTGATATGGATCTTAACTTGTGTAGGCAGCTAAAAGATAAGTGGGGATTCCGAATGACTGCTCGATATGAGTTGTATGCCAAATTGCTTGCTCAGTATCTAAAGCCTGACTTTGAGCCTCAAGTCATTTCTGATCCTTTGTTACACAAGAAGAAGGCTTCTTAA 1263 43.15 MENSNTSITDAANRELNDGKDATNNGSVCGYDSLHQLLAANLKPHIFQEVSRLLLGLNCGKPLQTLSLAEPVNSLSLEHDFDLQAFRFHADKESVREPRIVRVGLIQNSIALPTTAPFLDQKRAILEKVKPIIDAAGASGVNILCLQEAWMMPFAFCTREKRWCEFAEPIDGESTRFLQDLAIRYNMVIVSSILERDVSHGDTLWNTAVVIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAYGKIGINICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEIFPNPFTSGDGKPQHTDFGHFYGSSHFSAPDASCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAKLLAQYLKPDFEPQVISDPLLHKKKAS 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1494618 1499133 + MELO3C018607.2.1 Cme01g00208 317184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00208 420 Gene3D - 27 412 IPR036526 -
Cme01g00208 420 CDD ML_beta-AS 34 398 - -
Cme01g00208 420 PANTHER NITRILASE C965.09-RELATED 19 413 - -
Cme01g00208 420 Pfam Carbon-nitrogen hydrolase 104 378 IPR003010 GO:0006807
Cme01g00208 420 MobiDBLite consensus disorder prediction 1 22 - -
Cme01g00208 420 ProSiteProfiles Carbon-nitrogen hydrolase domain profile. 101 371 IPR003010 GO:0006807
Cme01g00208 420 SUPERFAMILY Carbon-nitrogen hydrolase 96 387 IPR036526 -
Cme01g00208 420 PANTHER BNAANNG15120D PROTEIN 19 413 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00208 K01431 UPB1, pydC; beta-ureidopropionase [EC:3.5.1.6] - csv:101223016 841.262
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00208 Cme-Chr1:1494618 Cme12g00671 Cme-Chr12:12297983 1.38E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g971 . . . . . . . . . . . . . . . . . Bhi05g00928 . . . . . . . . . . . . . . . . . . Csa07g00588 . Cme01g00208 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00222 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008913 1 1 1 2 0 1 2 1 1 1 1 1 1 1 1 3 1 1 2 1 1 1 1 1 1 0 0 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g00208 Cme_Chr01 FPKM 3.073187 3.268281 3.12631 3.77219 5.112673 6.066462 4.968493 3.793102 3.940233 3.82826