Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00214 ATGCCGGACTCCAATTTCCAAGACGCGATGTACGGTTCCGGAGTCATGAACGACGGTGGCCGGGATTTGGGTAACATTCAGAACAGAGTGGACGATGAAGATGACGACATCAACGGTGGGGAAGAGTCCATAGACAATCCTCAGATGCGGTTCGAAGACTCTGGGGGAATGAGCGGCTCGGTCTCAGTAATTAGCCGAGTTGAGGACGTTGTTCCTTCGACGTATGTTTCCGGCTCTGATTACAATCCTTTGACTGGAAACGGCGGTGCTGACCAACTTACGCTGTCGTTCCGAGGGGAGGTTTACGCTTTTGATTCTGTATCGCCGGACAAGGTACAAGCCGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCAGGTATTCCTGCAATTGGAAGTGTTCCCGTCAACCAACAGGGTGCCGATGGCTTTCCTGTCAGGTCGGTTCAACCACAAAGAGCTGCTTCATTGAGTAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTTGAGAAGAAAATTCGCTACAGTGTGCGAAAAGAAGTAGCGCTCAGAATGCAGCGGAAGAAGGGACAGTTTATATCCTCTAAAGCTATTGGAGATGAAGTGGGCTCATCTTCAGTTTTGTCTCAGACGTTGGATTCTGGACAAGATGATGGCTTGTTGGAGACCTCATGTACACATTGTGGAACCAGTTCAAAATCTACTCCAATGATGCGTCGTGGGCCTGCTGGTCCAAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATTTTGAGAGATCTTTCCAAGGTTTCAAACCCTAGCATTCAAGAACCCTCTGCGAAAGAGATTGAACAGAGCGACGGCGAGGCTGCTAATGAATCCAATGCTGCAATTAATGTGGATATTCTCACTTCTAATGGAGATAAAAAACCACAAAAGAGAGTATAA 942 47.24 MPDSNFQDAMYGSGVMNDGGRDLGNIQNRVDDEDDDINGGEESIDNPQMRFEDSGGMSGSVSVISRVEDVVPSTYVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAIGSVPVNQQGADGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYSVRKEVALRMQRKKGQFISSKAIGDEVGSSSVLSQTLDSGQDDGLLETSCTHCGTSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNPSIQEPSAKEIEQSDGEAANESNAAINVDILTSNGDKKPQKRV 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1534633 1541308 + MELO3C018614.2.1 Cme01g00214 317190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00214 313 MobiDBLite consensus disorder prediction 287 304 - -
Cme01g00214 313 Pfam CCT motif 153 195 IPR010402 GO:0005515
Cme01g00214 313 MobiDBLite consensus disorder prediction 1 57 - -
Cme01g00214 313 SMART tify_2 86 121 IPR010399 -
Cme01g00214 313 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355|GO:0043565
Cme01g00214 313 PANTHER GATA TRANSCRIPTION FACTOR 28 1 300 IPR045280 GO:0006355
Cme01g00214 313 SMART GATA_3 219 272 IPR000679 GO:0006355|GO:0043565
Cme01g00214 313 Pfam tify domain 90 120 IPR010399 -
Cme01g00214 313 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
Cme01g00214 313 Gene3D - 221 285 IPR013088 GO:0006355|GO:0008270
Cme01g00214 313 MobiDBLite consensus disorder prediction 267 313 - -
Cme01g00214 313 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Cme01g00214 313 PANTHER GATA TRANSCRIPTION FACTOR 18 1 300 - -
Cme01g00214 313 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515
Cme01g00214 313 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355|GO:0043565
Cme01g00214 313 CDD ZnF_GATA 224 274 IPR000679 GO:0006355|GO:0043565
Cme01g00214 313 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00214 Cme-Chr1:1534633 Cme03g01814 Cme-Chr3:26511985 7.74E-78 dispersed
Cme01g00214 Cme-Chr1:1534633 Cme01g02218 Cme-Chr1:30943628 2.31E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40689 PF06203 CCT 1.70E-15 CL0281 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00214 - - csv:101222542 583.948