Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g00219 ATGGACATCTCCTTGGCATCAATGGATGATTCTCCTACTACTCCCCTCAAGGCCTTTGCTACCTTTCTTATTCGCCACCACTCCGATCAGCTCCGCTCCATTGCTCATTCCCCTGATCCTAAGCTCCACTACCCTTTATTCGTGGAATTCGCTGAGCTGATGGACGACGACCCACCTCTTGCTCGTCTTCTCTTCTCCCGTCCGACCGACTACTTGCGTATTTTTGACGATGCAGCTGTTTGGGCTCATATGATCATTTTGGGTGATTCAAAAGGGTCCATGAATGGAGTTAAAAAGGATTTCATCCATGTTCGCATTAATGTCACTGGCTCCCCGCTTGAATTTCCTGAGACTTTTCCTAGTATTGGGTCTGTCAGAGTGAAGCATCATGGAGTGCTTCTCACACTCAAAGGAACGGTTATCCGATCCGGGGCAATTAAGATGTACGAGGGTGAGAGGTGGTATATCTGCCGGAAATGCAAGCACAAGTTCCCAGTTTATCCAGAGCTAGAAACTAGAAACTCAATACAGTTACCATCATTTTGTCCCTCTCAGAGGTCAAAACCATGTGAAGGGAAAAGTTTTGAGTGCTTGGAAGGTTCTGTTGTACGTCATGATTACCAAGAGATAAAAATTCAGGAGAGTACACAAGTTTTGGGTGTGGGGTCCATTCCTCGTTCCGTTCTAGTCATTCTCAAGGATGACCTTGTTGACCTTGTTAAAGCTGGAGATGACGTTATTGTTACAGGAGTATTGAGTGCAAAGTGGTCCCCAGACCTCAAAGATGTTCGGTGTGACCTTGATCCAATGCTAATTGCAAATCATGTGAGAAGAACCAATGAACTAAAGGCCGAGGTTGACATCCCTGATGATATAATTATGAAATTCACGCAGTTCTGGTCAAATTTCAAAGACACTCCTCTAAAAGGAAGAAATGCTATTCTAAGAGGTATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTGGCAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATATATCTGGTACTAAAGTTCGAGGTGAATCTCATCTACTGTTGGTTGGTGATCCTGGTACTGGAAAGTCACAGTTCCTGAAATTTGCTGCCAAATTGAGCAACCGAGCTGTTATTACCACCGGTTTAGGAAGCACTAGCGCTGGACTAACTGTTGCTGCTGTTAAGGATGGAGGGGAATGGATGCTGGAGGCTGGGGCACTTGTATTGGCTGATGGAGGACTTTGTTGCATAGATGAAGTGGACAGCATGAGAGAACATGACAGAGCCACGATCCATGAAGCAATGGAGCAACAGACTATAAGTGTGGCAAAGGCTGGTCTTGTAACAACTCTCAGTACTAGAACGATAGTATTTGGCGCAACAAATCCTAAAGGACATTATGACCCTGAACAACGTATCATTTTCACATTATTTGTGGTTTAA 1455 44.4 MDISLASMDDSPTTPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLLFSRPTDYLRIFDDAAVWAHMIILGDSKGSMNGVKKDFIHVRINVTGSPLEFPETFPSIGSVRVKHHGVLLTLKGTVIRSGAIKMYEGERWYICRKCKHKFPVYPELETRNSIQLPSFCPSQRSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSVLVILKDDLVDLVKAGDDVIVTGVLSAKWSPDLKDVRCDLDPMLIANHVRRTNELKAEVDIPDDIIMKFTQFWSNFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGHYDPEQRIIFTLFVV 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1554921 1576926 - MELO3C018619.2.1 Cme01g00219 317195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g00219 484 Pfam MCM OB domain 124 254 IPR033762 -
Cme01g00219 484 PANTHER DNA HELICASE MCM9 43 477 - -
Cme01g00219 484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 473 IPR027417 -
Cme01g00219 484 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 43 477 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cme01g00219 484 ProSiteProfiles MCM family domain profile. 310 467 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme01g00219 484 SMART mcm 118 482 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cme01g00219 484 Gene3D - 124 254 IPR012340 -
Cme01g00219 484 SUPERFAMILY Nucleic acid-binding proteins 43 261 IPR012340 -
Cme01g00219 484 Gene3D - 149 205 - -
Cme01g00219 484 SMART AAA_5 352 483 IPR003593 -
Cme01g00219 484 Gene3D - 296 480 IPR027417 -
Cme01g00219 484 Pfam MCM P-loop domain 312 477 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme01g00219 484 PRINTS Mini-chromosome maintenance (MCM) protein family signature 460 472 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme01g00219 484 PRINTS Mini-chromosome maintenance (MCM) protein family signature 409 423 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme01g00219 484 PRINTS Mini-chromosome maintenance (MCM) protein family signature 351 366 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme01g00219 484 PRINTS Mini-chromosome maintenance (MCM) protein family signature 437 450 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00219 Cme-Chr1:1554921 Cme04g01735 Cme-Chr4:24907917 3.70E-59 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g00219 K10738 - csv:101205171 919.842